RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 CAPN15O75808 1086 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 ZRANB2O95218 330 aaKnown RBP eCLIP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 PIP4K2AP48426 406 aaPredicted RBP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 CTSWP56202 376 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 FKBP1BP68106 108 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 RABL6Q3YEC7 729 aaPredicted RBP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 CC2D1AQ6P1N0 951 aaPredicted RBP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 NUTM1Q86Y26 1132 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 NIM1KQ8IY84 436 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 TTLL11Q8NHH1 800 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 AS3MTQ9HBK9 375 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 DIS3Q9Y2L1 958 aaKnown RBP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 TLL2Q9Y6L7 1015 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 IFRD1O00458 451 aaPredicted RBP6.41□□□□□ -1.38
CCDC39-205ENST00000485055 XRCC5P13010 732 aaKnown RBP6.41□□□□□ -1.38
CCDC39-205ENST00000485055 ARID5AQ03989 594 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 GCKRQ14397 625 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 BEND3Q5T5X7 828 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 IFFO2Q5TF58 517 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 PODNQ7Z5L7 613 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 PAF1Q8N7H5 531 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 ARHGAP45Q92619 1136 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 ANKRD2Q9GZV1 360 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 CDHR5Q9HBB8 845 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 DDNO94850 711 aaPredicted RBP6.41□□□□□ -1.38
CCDC39-205ENST00000485055 CXCL9Q07325 125 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 SIM2Q14190 667 aaPredicted RBP6.41□□□□□ -1.38
CCDC39-205ENST00000485055 KCTD2Q14681 263 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 KRT24Q2M2I5 525 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 CIAPIN1Q6FI81 312 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 DPP8Q6V1X1 898 aaPredicted RBP6.41□□□□□ -1.38
CCDC39-205ENST00000485055 TBC1D16Q8TBP0 767 aa6.41□□□□□ -1.38
CCDC39-205ENST00000485055 CDC5LQ99459 802 aaKnown RBP6.41□□□□□ -1.38
CCDC39-205ENST00000485055 ZNF277Q9NRM2 450 aaPredicted RBP6.41□□□□□ -1.38
CCDC39-205ENST00000485055 YDJCA8MPS7 323 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 ENPP3O14638 875 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 EIF2S2P20042 333 aaKnown RBP6.4□□□□□ -1.38
CCDC39-205ENST00000485055 MAP2K2P36507 400 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 RACK1P63244 317 aaKnown RBP6.4□□□□□ -1.38
CCDC39-205ENST00000485055 FOXO4P98177 505 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 GLYCTKQ8IVS8 523 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 TSPYL6Q8N831 410 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 STK31Q9BXU1 1019 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 PHAXQ9H814 394 aaKnown RBP6.4□□□□□ -1.38
CCDC39-205ENST00000485055 INPP5FQ9Y2H2 1132 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 NUB1Q9Y5A7 615 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 MAST2Q6P0Q8 1798 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 FOCADQ5VW36 1801 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 BPNT1O95861 308 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 GPTP24298 496 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 GPSM2P81274 684 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 SLFN5Q08AF3 891 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 C1QTNF12Q5T7M4 302 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 DNAAF4Q8WXU2 420 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 COA1Q9GZY4 146 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 CASS4Q9NQ75 786 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 SAGE1Q9NXZ1 904 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 POLLQ9UGP5 575 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 MAP3K2Q9Y2U5 619 aa6.4□□□□□ -1.38
CCDC39-205ENST00000485055 AKAP11Q9UKA4 1901 aa6.4□□□□□ -1.39
CCDC39-205ENST00000485055 PDS5AQ29RF7 1337 aaKnown RBP6.4□□□□□ -1.39
CCDC39-205ENST00000485055 POLR2AP24928 1970 aaKnown RBP6.4□□□□□ -1.39
CCDC39-205ENST00000485055 CA12O43570 354 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 IL1R1P14778 569 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 NEXNQ0ZGT2 675 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 MRFAP1L1Q96HT8 127 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 FAM205AQ6ZU69 1335 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 TCERG1O14776 1098 aaKnown RBP6.39□□□□□ -1.39
CCDC39-205ENST00000485055 TIMM44O43615 452 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 PPP4R4Q6NUP7 873 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 SKAP1Q86WV1 359 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 JAMLQ86YT9 394 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 CELF1Q92879 486 aaKnown RBP6.39□□□□□ -1.39
CCDC39-205ENST00000485055 PTPRHQ9HD43 1115 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 DCTN4Q9UJW0 460 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 PPP2R3BQ9Y5P8 575 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 GOLIM4O00461 696 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 NPHP1O15259 732 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 ARHGAP4P98171 946 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 POU5F1BQ06416 359 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 SEMA3FQ13275 785 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 MAP3K11Q16584 847 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 STRIP1Q5VSL9 837 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 MRPL50Q8N5N7 158 aaKnown RBP6.39□□□□□ -1.39
CCDC39-205ENST00000485055 APBA2Q99767 749 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 WBP1LQ9NX94 342 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 PARP2Q9UGN5 583 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 LZTS1Q9Y250 596 aa6.39□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L15C9J2P7 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L10C9JJH3 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L13C9JLJ4 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L12C9JPN9 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L11C9JVI0 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L21D6R901 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L18D6R9N7 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L22D6RA61 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L17D6RBQ6 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L19D6RCP7 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L20D6RJB6 530 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms