RNA–Protein interactions for RNA: ENST00000480598.1

LIMS4-202, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 679 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-202ENST00000480598 PTPN22Q9Y2R2 807 aa18.17■□□□□ 0.5
LIMS4-202ENST00000480598 AFG3L2Q9Y4W6 797 aa18.17■□□□□ 0.5
LIMS4-202ENST00000480598 FLT1P17948 1338 aa18.17■□□□□ 0.5
LIMS4-202ENST00000480598 FOCADQ5VW36 1801 aa18.16■□□□□ 0.5
LIMS4-202ENST00000480598 CENPFP49454 3210 aa18.16■□□□□ 0.5
LIMS4-202ENST00000480598 PTPRFP10586 1907 aa18.16■□□□□ 0.5
LIMS4-202ENST00000480598 A0A0G2JLL6 359 aaPredicted RBP18.16■□□□□ 0.5
LIMS4-202ENST00000480598 ECM2O94769 699 aaPredicted RBP18.16■□□□□ 0.5
LIMS4-202ENST00000480598 PRRT2Q7Z6L0 340 aaPredicted RBP18.16■□□□□ 0.5
LIMS4-202ENST00000480598 MIGA1Q8NAN2 632 aa18.16■□□□□ 0.5
LIMS4-202ENST00000480598 ARHGAP39Q9C0H5 1083 aa18.16■□□□□ 0.5
LIMS4-202ENST00000480598 CPA4Q9UI42 421 aa18.16■□□□□ 0.5
LIMS4-202ENST00000480598 ATAD5Q96QE3 1844 aa18.15■□□□□ 0.5
LIMS4-202ENST00000480598 TRIM75PA6NK02 468 aa18.15■□□□□ 0.5
LIMS4-202ENST00000480598 IGSF3O75054 1194 aa18.15■□□□□ 0.5
LIMS4-202ENST00000480598 RAB11FIP3O75154 756 aa18.15■□□□□ 0.5
LIMS4-202ENST00000480598 IFIT2P09913 472 aaKnown RBP18.15■□□□□ 0.5
LIMS4-202ENST00000480598 C17orf99Q6UX52 265 aa18.15■□□□□ 0.5
LIMS4-202ENST00000480598 GADL1Q6ZQY3 521 aa18.15■□□□□ 0.5
LIMS4-202ENST00000480598 PI4KBQ9UBF8 816 aa18.15■□□□□ 0.5
LIMS4-202ENST00000480598 SAP30BPQ9UHR5 308 aaKnown RBP18.15■□□□□ 0.5
LIMS4-202ENST00000480598 ADGRA2Q96PE1 1338 aa18.15■□□□□ 0.5
LIMS4-202ENST00000480598 LACTBP83111 547 aaPredicted RBP18.14■□□□□ 0.49
LIMS4-202ENST00000480598 MAP3K12Q12852 859 aa18.14■□□□□ 0.49
LIMS4-202ENST00000480598 SLC4A8Q2Y0W8 1093 aa18.14■□□□□ 0.49
LIMS4-202ENST00000480598 DHX36Q9H2U1 1008 aaKnown RBP18.14■□□□□ 0.49
LIMS4-202ENST00000480598 HERC5Q9UII4 1024 aaKnown RBP18.14■□□□□ 0.49
LIMS4-202ENST00000480598 PALD1Q9ULE6 856 aa18.14■□□□□ 0.49
LIMS4-202ENST00000480598 CYP2C8P10632 490 aa18.13■□□□□ 0.49
LIMS4-202ENST00000480598 CAP2P40123 477 aa18.13■□□□□ 0.49
LIMS4-202ENST00000480598 FASTKD5Q7L8L6 764 aaKnown RBP18.13■□□□□ 0.49
LIMS4-202ENST00000480598 PARK7Q99497 189 aaKnown RBP18.13■□□□□ 0.49
LIMS4-202ENST00000480598 DNAJC2Q99543 621 aaKnown RBP18.13■□□□□ 0.49
LIMS4-202ENST00000480598 DNAJC18Q9H819 358 aa18.13■□□□□ 0.49
LIMS4-202ENST00000480598 CTGFP29279 349 aa18.12■□□□□ 0.49
LIMS4-202ENST00000480598 KIF22Q14807 665 aa18.12■□□□□ 0.49
LIMS4-202ENST00000480598 ARHGEF6Q15052 776 aa18.12■□□□□ 0.49
LIMS4-202ENST00000480598 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.12■□□□□ 0.49
LIMS4-202ENST00000480598 EDC3Q96F86 508 aaKnown RBP18.12■□□□□ 0.49
LIMS4-202ENST00000480598 PTCH2Q9Y6C5 1203 aa18.12■□□□□ 0.49
LIMS4-202ENST00000480598 GOLIM4O00461 696 aa18.11■□□□□ 0.49
LIMS4-202ENST00000480598 USP5P45974 858 aa18.11■□□□□ 0.49
LIMS4-202ENST00000480598 SPP2Q13103 211 aa18.11■□□□□ 0.49
LIMS4-202ENST00000480598 TTF1Q15361 905 aaPredicted RBP18.11■□□□□ 0.49
LIMS4-202ENST00000480598 SHROOM1Q2M3G4 852 aaPredicted RBP18.11■□□□□ 0.49
LIMS4-202ENST00000480598 CRACR2BQ8N4Y2 399 aaPredicted RBP18.11■□□□□ 0.49
LIMS4-202ENST00000480598 TNRC18O15417 2968 aaPredicted RBP18.11■□□□□ 0.49
LIMS4-202ENST00000480598 MYH1P12882 1939 aa18.1■□□□□ 0.49
LIMS4-202ENST00000480598 SMARCA5O60264 1052 aaPredicted RBP18.1■□□□□ 0.49
LIMS4-202ENST00000480598 PDE6AP16499 860 aa18.1■□□□□ 0.49
LIMS4-202ENST00000480598 JAG1P78504 1218 aa18.1■□□□□ 0.49
LIMS4-202ENST00000480598 METTL16Q86W50 562 aaKnown RBP18.1■□□□□ 0.49
LIMS4-202ENST00000480598 ZNF280CQ8ND82 737 aa18.1■□□□□ 0.49
LIMS4-202ENST00000480598 ARMC5Q96C12 935 aa18.1■□□□□ 0.49
LIMS4-202ENST00000480598 RIOK1Q9BRS2 568 aaKnown RBP18.1■□□□□ 0.49
LIMS4-202ENST00000480598 BOLA2Q9H3K6 86 aa18.1■□□□□ 0.49
LIMS4-202ENST00000480598 USP17L5A8MUK1 530 aa18.09■□□□□ 0.49
LIMS4-202ENST00000480598 GDF11O95390 407 aa18.09■□□□□ 0.49
LIMS4-202ENST00000480598 HLA-DOAP06340 250 aa18.09■□□□□ 0.49
LIMS4-202ENST00000480598 BCRP11274 1271 aa18.09■□□□□ 0.49
LIMS4-202ENST00000480598 PSMC4P43686 418 aa18.09■□□□□ 0.49
LIMS4-202ENST00000480598 TREML2Q5T2D2 321 aa18.09■□□□□ 0.49
LIMS4-202ENST00000480598 SLC9C2Q5TAH2 1124 aa18.09■□□□□ 0.49
LIMS4-202ENST00000480598 FOXP4Q8IVH2 680 aaPredicted RBP18.09■□□□□ 0.49
LIMS4-202ENST00000480598 TRIM47Q96LD4 638 aa18.09■□□□□ 0.49
LIMS4-202ENST00000480598 TRIM34Q9BYJ4 488 aa18.09■□□□□ 0.49
LIMS4-202ENST00000480598 AGTPBP1Q9UPW5 1226 aa18.09■□□□□ 0.49
LIMS4-202ENST00000480598 BRCA2P51587 3418 aa18.08■□□□□ 0.49
LIMS4-202ENST00000480598 ZNF532Q9HCE3 1301 aa18.08■□□□□ 0.49
LIMS4-202ENST00000480598 MAGEB6P1A0A0J9YX57 407 aa18.08■□□□□ 0.48
LIMS4-202ENST00000480598 POTEFA5A3E0 1075 aa18.08■□□□□ 0.48
LIMS4-202ENST00000480598 HMGCS2P54868 508 aa18.08■□□□□ 0.48
LIMS4-202ENST00000480598 CERS3Q8IU89 383 aa18.08■□□□□ 0.48
LIMS4-202ENST00000480598 LRRCC1Q9C099 1032 aa18.08■□□□□ 0.48
LIMS4-202ENST00000480598 SLC45A1Q9Y2W3 748 aa18.08■□□□□ 0.48
LIMS4-202ENST00000480598 LOC285556D6RIA3 1793 aa18.08■□□□□ 0.48
LIMS4-202ENST00000480598 ATP5JP18859 108 aa18.07■□□□□ 0.48
LIMS4-202ENST00000480598 SLFNL1Q499Z3 407 aa18.07■□□□□ 0.48
LIMS4-202ENST00000480598 SLC9C1Q4G0N8 1177 aa18.07■□□□□ 0.48
LIMS4-202ENST00000480598 TMED8Q6PL24 325 aaPredicted RBP18.07■□□□□ 0.48
LIMS4-202ENST00000480598 TBC1D2Q9BYX2 928 aa18.07■□□□□ 0.48
LIMS4-202ENST00000480598 PAG1Q9NWQ8 432 aa18.07■□□□□ 0.48
LIMS4-202ENST00000480598 KIAA0100Q14667 2235 aaKnown RBP18.07■□□□□ 0.48
LIMS4-202ENST00000480598 NAV1Q8NEY1 1877 aa18.06■□□□□ 0.48
LIMS4-202ENST00000480598 TCRBV5S4A2TA0A5A2 114 aa18.06■□□□□ 0.48
LIMS4-202ENST00000480598 FMNL1O95466 1100 aaPredicted RBP18.06■□□□□ 0.48
LIMS4-202ENST00000480598 ASNSP08243 561 aa18.06■□□□□ 0.48
LIMS4-202ENST00000480598 OSBPP22059 807 aa18.06■□□□□ 0.48
LIMS4-202ENST00000480598 PROCA1Q8NCQ7 364 aaPredicted RBP18.06■□□□□ 0.48
LIMS4-202ENST00000480598 SMCR8Q8TEV9 937 aaPredicted RBP18.06■□□□□ 0.48
LIMS4-202ENST00000480598 SH3TC2Q8TF17 1288 aa18.06■□□□□ 0.48
LIMS4-202ENST00000480598 ZNF333Q96JL9 665 aa18.06■□□□□ 0.48
LIMS4-202ENST00000480598 YTHDC1Q96MU7 727 aaKnown RBP18.06■□□□□ 0.48
LIMS4-202ENST00000480598 HAUS7Q99871 368 aa18.06■□□□□ 0.48
LIMS4-202ENST00000480598 AS3MTQ9HBK9 375 aa18.06■□□□□ 0.48
LIMS4-202ENST00000480598 ZBTB21Q9ULJ3 1066 aa18.06■□□□□ 0.48
LIMS4-202ENST00000480598 DDX60LQ5H9U9 1706 aaKnown RBP18.06■□□□□ 0.48
LIMS4-202ENST00000480598 MYCP01106 439 aaPredicted RBP18.05■□□□□ 0.48
LIMS4-202ENST00000480598 GNRH1P01148 92 aa18.05■□□□□ 0.48
LIMS4-202ENST00000480598 MTMR2Q13614 643 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms