RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 CRACR2BQ8N4Y2 399 aaPredicted RBP9.84□□□□□ -0.83
USP54-212ENST00000480210 SDR42E1Q8WUS8 393 aa9.84□□□□□ -0.83
USP54-212ENST00000480210 KLRG1Q96E93 195 aa9.84□□□□□ -0.83
USP54-212ENST00000480210 ESYT1Q9BSJ8 1104 aa9.84□□□□□ -0.83
USP54-212ENST00000480210 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP54-212ENST00000480210 ZNF112Q9UJU3 913 aa9.84□□□□□ -0.83
USP54-212ENST00000480210 DDX60LQ5H9U9 1706 aaKnown RBP9.84□□□□□ -0.83
USP54-212ENST00000480210 USP17L12C9JPN9 530 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 USP17L21D6R901 530 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 TRAF5O00463 557 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 PRKAB2O43741 272 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 CTNND1O60716 968 aaKnown RBP9.83□□□□□ -0.84
USP54-212ENST00000480210 REC8O95072 547 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 CHGBP05060 677 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 HSPA6P17066 643 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 PDE4BQ07343 736 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 CST9Q5W186 159 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 CTR9Q6PD62 1173 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 SH3BP5LQ7L8J4 393 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 ZFPM1Q8IX07 1006 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 PIAS4Q8N2W9 510 aaPredicted RBP9.83□□□□□ -0.84
USP54-212ENST00000480210 CCDC17Q96LX7 622 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 ZNF408Q9H9D4 720 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 ANAPC4Q9UJX5 808 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 PALD1Q9ULE6 856 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 ANGEL1Q9UNK9 670 aaKnown RBP9.83□□□□□ -0.84
USP54-212ENST00000480210 CSADQ9Y600 493 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 TLL2Q9Y6L7 1015 aa9.83□□□□□ -0.84
USP54-212ENST00000480210 U3KPZ7 1027 aaPredicted RBP9.83□□□□□ -0.84
USP54-212ENST00000480210 SIPA1L1O43166 1804 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 ATAD5Q96QE3 1844 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 ZNF213O14771 459 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 FGAP02671 866 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 ECE1P42892 770 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 GABPAQ06546 454 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 IMMTQ16891 758 aaKnown RBP9.82□□□□□ -0.84
USP54-212ENST00000480210 PPP4R3BQ5MIZ7 849 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 NOL9Q5SY16 702 aaKnown RBP9.82□□□□□ -0.84
USP54-212ENST00000480210 LDLRAD1Q5T700 205 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 PRAMEF18Q5VWM3 479 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 TATDN1Q6P1N9 297 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 CCDC129Q6ZRS4 1044 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 SAPCD2Q86UD0 394 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 ZNF589Q86UQ0 364 aaPredicted RBP9.82□□□□□ -0.84
USP54-212ENST00000480210 REM2Q8IYK8 340 aaPredicted RBP9.82□□□□□ -0.84
USP54-212ENST00000480210 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP54-212ENST00000480210 MAP4K1Q92918 833 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 CCDC102AQ96A19 550 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 RNF41Q9H4P4 317 aaPredicted RBP9.82□□□□□ -0.84
USP54-212ENST00000480210 CABP5Q9NP86 173 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 LAMA4Q16363 1823 aa9.82□□□□□ -0.84
USP54-212ENST00000480210 DOCK1Q14185 1865 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 ROBO3Q96MS0 1386 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 PHF20L1A8MW92 1017 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 MINDY4BA8MYZ0 360 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 ASNSP08243 561 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 PLCD1P51178 756 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 HUNKP57058 714 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 PPARAQ07869 468 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 DEFB115Q30KQ5 88 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 GLIPR1L2Q4G1C9 344 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 RNF20Q5VTR2 975 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 RGMBQ6NW40 437 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 C16orf86Q6ZW13 317 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 MIGA2Q7L4E1 593 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 SKAP1Q86WV1 359 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 ZNF444Q8N0Y2 327 aaPredicted RBP9.81□□□□□ -0.84
USP54-212ENST00000480210 SLC10A4Q96EP9 437 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 MKNK2Q9HBH9 465 aa9.81□□□□□ -0.84
USP54-212ENST00000480210 SAP30BPQ9UHR5 308 aaKnown RBP9.81□□□□□ -0.84
USP54-212ENST00000480210 ABT1Q9ULW3 272 aaKnown RBP9.81□□□□□ -0.84
USP54-212ENST00000480210 SCAF8Q9UPN6 1271 aaKnown RBP9.81□□□□□ -0.84
USP54-212ENST00000480210 RASSF10A6NK89 507 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 FGRP09769 529 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 CAP2P40123 477 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 CDK8P49336 464 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 PPATQ06203 517 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 CERKLQ49MI3 558 aaPredicted RBP9.8□□□□□ -0.84
USP54-212ENST00000480210 CCDC178Q5BJE1 867 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 VPS53Q5VIR6 699 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 SCYL3Q8IZE3 742 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 WRNIP1Q96S55 665 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 CNNM2Q9H8M5 875 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 AS3MTQ9HBK9 375 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 EPB41L4AQ9HCS5 686 aaPredicted RBP9.8□□□□□ -0.84
USP54-212ENST00000480210 PICK1Q9NRD5 415 aa9.8□□□□□ -0.84
USP54-212ENST00000480210 OTOFQ9HC10 1997 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 UBE2Q2LH0YL09 131 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 ORC4O43929 436 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 ZBTB48P10074 688 aaPredicted RBP9.79□□□□□ -0.84
USP54-212ENST00000480210 INHBEP58166 350 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 AKNAD1Q5T1N1 836 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 MFSD6Q6ZSS7 791 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 ERO1BQ86YB8 467 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 STAG1Q8WVM7 1258 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 KRT23Q9C075 422 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 LSG1Q9H089 658 aaKnown RBP9.79□□□□□ -0.84
USP54-212ENST00000480210 ANO2Q9NQ90 1003 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 SSC5DA1L4H1 1573 aa9.79□□□□□ -0.84
USP54-212ENST00000480210 PHIPQ8WWQ0 1821 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms