RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 CAP2P40123 477 aa14.67□□□□□ -0.06
SYNE1-223ENST00000476519 SOX10P56693 466 aa14.67□□□□□ -0.06
SYNE1-223ENST00000476519 LACTBP83111 547 aaPredicted RBP14.67□□□□□ -0.06
SYNE1-223ENST00000476519 MAPKAPK5Q8IW41 473 aa14.67□□□□□ -0.06
SYNE1-223ENST00000476519 PARK7Q99497 189 aaKnown RBP14.67□□□□□ -0.06
SYNE1-223ENST00000476519 ANTXR1Q9H6X2 564 aa14.67□□□□□ -0.06
SYNE1-223ENST00000476519 OTOFQ9HC10 1997 aa14.66□□□□□ -0.06
SYNE1-223ENST00000476519 APBB1O00213 710 aa14.66□□□□□ -0.06
SYNE1-223ENST00000476519 PRMT2P55345 433 aa14.66□□□□□ -0.06
SYNE1-223ENST00000476519 ZNF280CQ8ND82 737 aa14.66□□□□□ -0.06
SYNE1-223ENST00000476519 GINM1Q9NU53 330 aa14.66□□□□□ -0.06
SYNE1-223ENST00000476519 FLT1P17948 1338 aa14.66□□□□□ -0.06
SYNE1-223ENST00000476519 TRIM75PA6NK02 468 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 USP17L5A8MUK1 530 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 HLA-DOAP06340 250 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 HOXD10P28358 340 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 DYNLL1P63167 89 aaKnown RBP14.65□□□□□ -0.06
SYNE1-223ENST00000476519 CAP1Q01518 475 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 NBPF11Q86T75 865 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 ARMC5Q96C12 935 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 CPA4Q9UI42 421 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 PALD1Q9ULE6 856 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 NDUFB9Q9Y6M9 179 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 HTTP42858 3142 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 LAMB1P07942 1786 aa14.65□□□□□ -0.06
SYNE1-223ENST00000476519 FAM196BA6NMK8 535 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 ASNSP08243 561 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 ATP5JP18859 108 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 USP5P45974 858 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 SPP2Q13103 211 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 RRP1BQ14684 758 aaKnown RBP14.64□□□□□ -0.07
SYNE1-223ENST00000476519 SLC9C2Q5TAH2 1124 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 CRACR2BQ8N4Y2 399 aaPredicted RBP14.64□□□□□ -0.07
SYNE1-223ENST00000476519 MIGA1Q8NAN2 632 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 PROCA1Q8NCQ7 364 aaPredicted RBP14.64□□□□□ -0.07
SYNE1-223ENST00000476519 WDR18Q9BV38 432 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 TRIM34Q9BYJ4 488 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 LRRCC1Q9C099 1032 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 AS3MTQ9HBK9 375 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 ADGRA2Q96PE1 1338 aa14.64□□□□□ -0.07
SYNE1-223ENST00000476519 AK9Q5TCS8 1911 aa14.63□□□□□ -0.07
SYNE1-223ENST00000476519 CYP2C8P10632 490 aa14.63□□□□□ -0.07
SYNE1-223ENST00000476519 BCRP11274 1271 aa14.63□□□□□ -0.07
SYNE1-223ENST00000476519 GADL1Q6ZQY3 521 aa14.63□□□□□ -0.07
SYNE1-223ENST00000476519 TTC6Q86TZ1 520 aa14.63□□□□□ -0.07
SYNE1-223ENST00000476519 RIOK1Q9BRS2 568 aaKnown RBP14.63□□□□□ -0.07
SYNE1-223ENST00000476519 DCTPP1Q9H773 170 aa14.63□□□□□ -0.07
SYNE1-223ENST00000476519 AGTPBP1Q9UPW5 1226 aa14.63□□□□□ -0.07
SYNE1-223ENST00000476519 MAGEB6P1A0A0J9YX57 407 aa14.62□□□□□ -0.07
SYNE1-223ENST00000476519 GOLIM4O00461 696 aa14.62□□□□□ -0.07
SYNE1-223ENST00000476519 PDE6AP16499 860 aa14.62□□□□□ -0.07
SYNE1-223ENST00000476519 PSMC4P43686 418 aa14.62□□□□□ -0.07
SYNE1-223ENST00000476519 PABPC4Q13310 644 aaKnown RBP eCLIP14.62□□□□□ -0.07
SYNE1-223ENST00000476519 SH3D19Q5HYK7 790 aa14.62□□□□□ -0.07
SYNE1-223ENST00000476519 DNAJC2Q99543 621 aaKnown RBP14.62□□□□□ -0.07
SYNE1-223ENST00000476519 HAUS7Q99871 368 aa14.62□□□□□ -0.07
SYNE1-223ENST00000476519 ARHGAP39Q9C0H5 1083 aa14.62□□□□□ -0.07
SYNE1-223ENST00000476519 SAP30BPQ9UHR5 308 aaKnown RBP14.62□□□□□ -0.07
SYNE1-223ENST00000476519 C19orf81C9J6K1 198 aa14.61□□□□□ -0.07
SYNE1-223ENST00000476519 FMNL1O95466 1100 aaPredicted RBP14.61□□□□□ -0.07
SYNE1-223ENST00000476519 SLC9C1Q4G0N8 1177 aa14.61□□□□□ -0.07
SYNE1-223ENST00000476519 CCDC84Q86UT8 332 aaPredicted RBP14.61□□□□□ -0.07
SYNE1-223ENST00000476519 CRNKL1Q9BZJ0 848 aaKnown RBP14.61□□□□□ -0.07
SYNE1-223ENST00000476519 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.61□□□□□ -0.07
SYNE1-223ENST00000476519 EHD4Q9H223 541 aa14.61□□□□□ -0.07
SYNE1-223ENST00000476519 BOLA2Q9H3K6 86 aa14.61□□□□□ -0.07
SYNE1-223ENST00000476519 PAG1Q9NWQ8 432 aa14.61□□□□□ -0.07
SYNE1-223ENST00000476519 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.61□□□□□ -0.07
SYNE1-223ENST00000476519 SRRDQ9UH36 339 aa14.61□□□□□ -0.07
SYNE1-223ENST00000476519 SERPINB13Q9UIV8 391 aa14.61□□□□□ -0.07
SYNE1-223ENST00000476519 PNMA3Q9UL41 463 aa14.61□□□□□ -0.07
SYNE1-223ENST00000476519 PTCH2Q9Y6C5 1203 aa14.61□□□□□ -0.07
SYNE1-223ENST00000476519 CENPFP49454 3210 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 TCRBV5S4A2TA0A5A2 114 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 OSBPP22059 807 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 FCGRTP55899 365 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 BACE1P56817 501 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 TATDN1Q6P1N9 297 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 SMCR8Q8TEV9 937 aaPredicted RBP14.6□□□□□ -0.07
SYNE1-223ENST00000476519 ZNF333Q96JL9 665 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 TRIM47Q96LD4 638 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 TMEM106CQ9BVX2 250 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 BCL11AQ9H165 835 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 DNAJC18Q9H819 358 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 TAOK2Q9UL54 1235 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 ZNF532Q9HCE3 1301 aa14.6□□□□□ -0.07
SYNE1-223ENST00000476519 CTGFP29279 349 aa14.59□□□□□ -0.07
SYNE1-223ENST00000476519 GCLCP48506 637 aaPredicted RBP14.59□□□□□ -0.07
SYNE1-223ENST00000476519 HMGCS2P54868 508 aa14.59□□□□□ -0.07
SYNE1-223ENST00000476519 TREML2Q5T2D2 321 aa14.59□□□□□ -0.07
SYNE1-223ENST00000476519 ECHDC1Q9NTX5 307 aa14.59□□□□□ -0.07
SYNE1-223ENST00000476519 TMOD4Q9NZQ9 345 aa14.59□□□□□ -0.07
SYNE1-223ENST00000476519 USP17L10C9JJH3 530 aa14.58□□□□□ -0.08
SYNE1-223ENST00000476519 POLR3DP05423 398 aaPredicted RBP14.58□□□□□ -0.08
SYNE1-223ENST00000476519 HOXA7P31268 230 aaPredicted RBP14.58□□□□□ -0.08
SYNE1-223ENST00000476519 JAG1P78504 1218 aa14.58□□□□□ -0.08
SYNE1-223ENST00000476519 UBE3CQ15386 1083 aa14.58□□□□□ -0.08
SYNE1-223ENST00000476519 ZSCAN25Q6NSZ9 544 aa14.58□□□□□ -0.08
SYNE1-223ENST00000476519 ZBTB21Q9ULJ3 1066 aa14.58□□□□□ -0.08
SYNE1-223ENST00000476519 SMARCA5O60264 1052 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms