RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 RSRP1Q9BUV0 290 aa8.12□□□□□ -1.11
PTCD3-211ENST00000476215 COPRSQ9NQ92 184 aa8.12□□□□□ -1.11
PTCD3-211ENST00000476215 KBTBD4Q9NVX7 518 aa8.12□□□□□ -1.11
PTCD3-211ENST00000476215 OAS3Q9Y6K5 1087 aaKnown RBP8.12□□□□□ -1.11
PTCD3-211ENST00000476215 WNT11O96014 354 aa8.11□□□□□ -1.11
PTCD3-211ENST00000476215 RPS26P62854 115 aaKnown RBP8.11□□□□□ -1.11
PTCD3-211ENST00000476215 PWP1Q13610 501 aa8.11□□□□□ -1.11
PTCD3-211ENST00000476215 NT5DC4Q86YG4 428 aa8.11□□□□□ -1.11
PTCD3-211ENST00000476215 GAL3ST3Q96A11 431 aa8.11□□□□□ -1.11
PTCD3-211ENST00000476215 IGSF5Q9NSI5 407 aa8.11□□□□□ -1.11
PTCD3-211ENST00000476215 TLR6Q9Y2C9 796 aa8.11□□□□□ -1.11
PTCD3-211ENST00000476215 MINDY4BA8MYZ0 360 aa8.1□□□□□ -1.11
PTCD3-211ENST00000476215 HCLS1P14317 486 aaPredicted RBP8.1□□□□□ -1.11
PTCD3-211ENST00000476215 CYP27C1Q4G0S4 372 aa8.1□□□□□ -1.11
PTCD3-211ENST00000476215 ZNF394Q53GI3 561 aa8.1□□□□□ -1.11
PTCD3-211ENST00000476215 AGMOQ6ZNB7 445 aa8.1□□□□□ -1.11
PTCD3-211ENST00000476215 USP48Q86UV5 1035 aa8.1□□□□□ -1.11
PTCD3-211ENST00000476215 VSIG10LQ86VR7 867 aa8.1□□□□□ -1.11
PTCD3-211ENST00000476215 TMEM74Q96NL1 305 aa8.1□□□□□ -1.11
PTCD3-211ENST00000476215 BSDC1Q9NW68 430 aaPredicted RBP8.1□□□□□ -1.11
PTCD3-211ENST00000476215 CCDC39Q9UFE4 941 aa8.1□□□□□ -1.11
PTCD3-211ENST00000476215 PCDHGB7Q9Y5F8 929 aa8.1□□□□□ -1.11
PTCD3-211ENST00000476215 COL17A1Q9UMD9 1497 aaPredicted RBP8.09□□□□□ -1.11
PTCD3-211ENST00000476215 FANCGO15287 622 aa8.09□□□□□ -1.11
PTCD3-211ENST00000476215 ERCC5P28715 1186 aaPredicted RBP8.09□□□□□ -1.11
PTCD3-211ENST00000476215 PHC3Q8NDX5 983 aa8.09□□□□□ -1.11
PTCD3-211ENST00000476215 MKNK2Q9HBH9 465 aa8.09□□□□□ -1.11
PTCD3-211ENST00000476215 ZC3H7BQ9UGR2 993 aaKnown RBP8.09□□□□□ -1.11
PTCD3-211ENST00000476215 TFE3P19532 575 aaPredicted RBP8.08□□□□□ -1.12
PTCD3-211ENST00000476215 CDK5R2Q13319 367 aa8.08□□□□□ -1.12
PTCD3-211ENST00000476215 ZBTB37Q5TC79 503 aa8.08□□□□□ -1.12
PTCD3-211ENST00000476215 ACSBG1Q96GR2 724 aa8.08□□□□□ -1.12
PTCD3-211ENST00000476215 FAM87AP0C7U9 286 aa8.07□□□□□ -1.12
PTCD3-211ENST00000476215 FAM160A1Q05DH4 1040 aa8.07□□□□□ -1.12
PTCD3-211ENST00000476215 MCTP1Q6DN14 999 aa8.07□□□□□ -1.12
PTCD3-211ENST00000476215 CYFIP1Q7L576 1253 aa8.07□□□□□ -1.12
PTCD3-211ENST00000476215 FAM214BQ7L5A3 538 aa8.07□□□□□ -1.12
PTCD3-211ENST00000476215 WFDC3Q8IUB2 231 aa8.07□□□□□ -1.12
PTCD3-211ENST00000476215 RHOVQ96L33 236 aa8.07□□□□□ -1.12
PTCD3-211ENST00000476215 DUSP23Q9BVJ7 150 aa8.07□□□□□ -1.12
PTCD3-211ENST00000476215 PCDHB5Q9Y5E4 795 aa8.07□□□□□ -1.12
PTCD3-211ENST00000476215 RNGTTO60942 597 aaKnown RBP8.06□□□□□ -1.12
PTCD3-211ENST00000476215 PF4P02776 101 aa8.06□□□□□ -1.12
PTCD3-211ENST00000476215 CAP2P40123 477 aa8.06□□□□□ -1.12
PTCD3-211ENST00000476215 RACK1P63244 317 aaKnown RBP8.06□□□□□ -1.12
PTCD3-211ENST00000476215 PTPN11Q06124 597 aaPredicted RBP8.06□□□□□ -1.12
PTCD3-211ENST00000476215 CAMK2GQ13555 558 aaPredicted RBP8.06□□□□□ -1.12
PTCD3-211ENST00000476215 SEPT6Q14141 434 aa8.06□□□□□ -1.12
PTCD3-211ENST00000476215 PPM1JQ5JR12 505 aa8.06□□□□□ -1.12
PTCD3-211ENST00000476215 FBXL18Q96ME1 805 aa8.06□□□□□ -1.12
PTCD3-211ENST00000476215 MIR1-1HGQ9H1L0 117 aa8.06□□□□□ -1.12
PTCD3-211ENST00000476215 DDX41Q9UJV9 622 aaKnown RBP8.06□□□□□ -1.12
PTCD3-211ENST00000476215 EIF4A3P38919 411 aaKnown RBP8.05□□□□□ -1.12
PTCD3-211ENST00000476215 RANGAP1P46060 587 aaPredicted RBP8.05□□□□□ -1.12
PTCD3-211ENST00000476215 LMNB2Q03252 620 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 RAD51AP2Q09MP3 1159 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 SNAP47Q5SQN1 464 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 LRFN4Q6PJG9 635 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.05□□□□□ -1.12
PTCD3-211ENST00000476215 ZNF654Q8IZM8 581 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 KCT2Q8NC54 265 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 JARID2Q92833 1246 aaPredicted RBP8.05□□□□□ -1.12
PTCD3-211ENST00000476215 LGR6Q9HBX8 967 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 ADGRE2Q9UHX3 823 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 PCDHA4Q9UN74 947 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.05□□□□□ -1.12
PTCD3-211ENST00000476215 TACC3Q9Y6A5 838 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 SNCAIPQ9Y6H5 919 aa8.05□□□□□ -1.12
PTCD3-211ENST00000476215 DCDC2CA8MYV0 355 aa8.04□□□□□ -1.12
PTCD3-211ENST00000476215 LEFTY1O75610 366 aa8.04□□□□□ -1.12
PTCD3-211ENST00000476215 INPP5AQ14642 412 aa8.04□□□□□ -1.12
PTCD3-211ENST00000476215 CBLL1Q75N03 491 aa8.04□□□□□ -1.12
PTCD3-211ENST00000476215 UBE3DQ7Z6J8 389 aa8.04□□□□□ -1.12
PTCD3-211ENST00000476215 GOLM1Q8NBJ4 401 aa8.04□□□□□ -1.12
PTCD3-211ENST00000476215 MISP3Q96FF7 219 aa8.04□□□□□ -1.12
PTCD3-211ENST00000476215 TGIF2Q9GZN2 237 aa8.04□□□□□ -1.12
PTCD3-211ENST00000476215 CCSER2Q9H7U1 834 aa8.04□□□□□ -1.12
PTCD3-211ENST00000476215 ADAMTS1Q9UHI8 967 aa8.04□□□□□ -1.12
PTCD3-211ENST00000476215 IGF2BP3O00425 579 aaKnown RBP eCLIP8.03□□□□□ -1.12
PTCD3-211ENST00000476215 FBXL19Q6PCT2 694 aa8.03□□□□□ -1.12
PTCD3-211ENST00000476215 C12orf40Q86WS4 652 aa8.03□□□□□ -1.12
PTCD3-211ENST00000476215 ZNF296Q8WUU4 475 aaPredicted RBP8.03□□□□□ -1.12
PTCD3-211ENST00000476215 SPON2Q9BUD6 331 aa8.03□□□□□ -1.12
PTCD3-211ENST00000476215 LRRC4CQ9HCJ2 640 aa8.03□□□□□ -1.12
PTCD3-211ENST00000476215 PAK6Q9NQU5 681 aaPredicted RBP8.03□□□□□ -1.12
PTCD3-211ENST00000476215 ANGEL1Q9UNK9 670 aaKnown RBP8.03□□□□□ -1.12
PTCD3-211ENST00000476215 SUPT16HQ9Y5B9 1047 aaKnown RBP8.03□□□□□ -1.12
PTCD3-211ENST00000476215 U3KQE9 123 aa8.03□□□□□ -1.12
PTCD3-211ENST00000476215 IRAK1P51617 712 aa8.02□□□□□ -1.13
PTCD3-211ENST00000476215 OXCT1P55809 520 aa8.02□□□□□ -1.13
PTCD3-211ENST00000476215 DIEXFQ68CQ4 756 aaKnown RBP8.02□□□□□ -1.13
PTCD3-211ENST00000476215 BNC2Q6ZN30 1099 aaPredicted RBP8.02□□□□□ -1.13
PTCD3-211ENST00000476215 HDXQ7Z353 690 aa8.02□□□□□ -1.13
PTCD3-211ENST00000476215 CCDC84Q86UT8 332 aaPredicted RBP8.02□□□□□ -1.13
PTCD3-211ENST00000476215 KIAA0825Q8IV33 1275 aa8.02□□□□□ -1.13
PTCD3-211ENST00000476215 ABI1Q8IZP0 508 aa8.02□□□□□ -1.13
PTCD3-211ENST00000476215 STK11IPQ8N1F8 1099 aa8.02□□□□□ -1.13
PTCD3-211ENST00000476215 ZNF507Q8TCN5 953 aa8.02□□□□□ -1.13
PTCD3-211ENST00000476215 NETO1Q8TDF5 533 aa8.02□□□□□ -1.13
PTCD3-211ENST00000476215 BCL7CQ8WUZ0 217 aaPredicted RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms