RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ZKSCAN1P17029 563 aaPredicted RBP6.24□□□□□ -1.41
USP4-209ENST00000475873 IGHMBP2P38935 993 aaKnown RBP6.24□□□□□ -1.41
USP4-209ENST00000475873 GYG1P46976 350 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 FOXK2Q01167 660 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 TLE2Q04725 743 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 TCP10Q12799 353 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 MORN1Q5T089 497 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 SCYL3Q8IZE3 742 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 MICALL1Q8N3F8 863 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 LPAR1Q92633 364 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 CFAP53Q96M91 514 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 ZDHHC15Q96MV8 337 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 METTL22Q9BUU2 404 aaPredicted RBP6.24□□□□□ -1.41
USP4-209ENST00000475873 PORCNQ9H237 461 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 NKX2-4Q9H2Z4 354 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 HYPKQ9NX55 129 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 MORF4L1Q9UBU8 362 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 FAM198AQ9UFP1 575 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 DDX20Q9UHI6 824 aaKnown RBP6.24□□□□□ -1.41
USP4-209ENST00000475873 ATRXP46100 2492 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 TECTAO75443 2155 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 DOCK2Q92608 1830 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 A0A0G2JMZ2 1700 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 CHL1O00533 1208 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 KIAA0355O15063 1070 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 RGS20O76081 388 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 CSF1RP07333 972 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 PPP2R1AP30153 589 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 CASP7P55210 303 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 HDLBPQ00341 1268 aaKnown RBP6.23□□□□□ -1.41
USP4-209ENST00000475873 CWF19L2Q2TBE0 894 aaKnown RBP6.23□□□□□ -1.41
USP4-209ENST00000475873 TMEM240Q5SV17 173 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 SH3BP5LQ7L8J4 393 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 PRSS33Q8NF86 280 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 FAM151AQ8WW52 585 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 FAM84BQ96KN1 310 aaPredicted RBP6.23□□□□□ -1.41
USP4-209ENST00000475873 UIMC1Q96RL1 719 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 NUDT12Q9BQG2 462 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 ASCC2Q9H1I8 757 aaPredicted RBP6.23□□□□□ -1.41
USP4-209ENST00000475873 BABAM1Q9NWV8 329 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 IQSEC3Q9UPP2 1182 aaPredicted RBP6.23□□□□□ -1.41
USP4-209ENST00000475873 CHD6Q8TD26 2715 aa6.23□□□□□ -1.41
USP4-209ENST00000475873 ACACBO00763 2458 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 EPOPA6NHQ4 379 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 H7C1W4 665 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 RFXAPO00287 272 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 ADCYAP1R1P41586 468 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 GCLCP48506 637 aaPredicted RBP6.22□□□□□ -1.41
USP4-209ENST00000475873 FPGSQ05932 587 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 GOLGA2Q08379 1002 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 AAK1Q2M2I8 961 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 Q3C1V9 767 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 C1orf53Q5VUE5 145 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 ANO1Q5XXA6 986 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 UBE3BQ7Z3V4 1068 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 SOCS4Q8WXH5 440 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 TEKT1Q969V4 418 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 FERMT2Q96AC1 680 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 HOOK2Q96ED9 719 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 MPHOSPH8Q99549 860 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 APBA2Q99767 749 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 PLA2G12BQ9BX93 195 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 ALG13Q9NP73 1137 aaKnown RBP6.22□□□□□ -1.41
USP4-209ENST00000475873 MTCH2Q9Y6C9 303 aa6.22□□□□□ -1.41
USP4-209ENST00000475873 CLTBP09497 229 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 HOXB7P09629 217 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 CYBAP13498 195 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 MYOGP15173 224 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 CYP2C19P33261 490 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 MAP3K10Q02779 954 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 SKIV2LQ15477 1246 aaKnown RBP6.21□□□□□ -1.42
USP4-209ENST00000475873 DUSP27Q5VZP5 1158 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 CDC42EP5Q6NZY7 148 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 CCDC129Q6ZRS4 1044 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 HFE2Q6ZVN8 426 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 GPR142Q7Z601 462 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 HERVK_113Q902F9 699 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 KCNH6Q9H252 994 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 SPINK5Q9NQ38 1064 aaPredicted RBP6.21□□□□□ -1.42
USP4-209ENST00000475873 RBPJLQ9UBG7 517 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 MAP3K2Q9Y2U5 619 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 DMXL1Q9Y485 3027 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 SMCHD1A6NHR9 2005 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 UTYO14607 1347 aa6.21□□□□□ -1.42
USP4-209ENST00000475873 RFX7Q2KHR2 1363 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 PLXNA3P51805 1871 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 NEURL1BA8MQ27 555 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 ARHGEF15O94989 841 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 ACRP10323 421 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 RAG1P15918 1043 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 POU3F3P20264 500 aaPredicted RBP6.2□□□□□ -1.42
USP4-209ENST00000475873 RGS2P41220 211 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 RABGGTBP53611 331 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 HMGCS2P54868 508 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 FAAP100Q0VG06 881 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 CHAF1AQ13111 956 aaPredicted RBP6.2□□□□□ -1.42
USP4-209ENST00000475873 RRP1BQ14684 758 aaKnown RBP6.2□□□□□ -1.42
USP4-209ENST00000475873 IER5LQ5T953 404 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 TRMT44Q8IYL2 757 aaKnown RBP6.2□□□□□ -1.42
USP4-209ENST00000475873 PROCA1Q8NCQ7 364 aaPredicted RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms