RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 CENPFP49454 3210 aa22.7■■□□□ 1.22
COL7A1-209ENST00000474432 BAG3O95817 575 aa22.7■■□□□ 1.22
COL7A1-209ENST00000474432 TGFBRAP1Q8WUH2 860 aa22.7■■□□□ 1.22
COL7A1-209ENST00000474432 ARMC5Q96C12 935 aa22.7■■□□□ 1.22
COL7A1-209ENST00000474432 RBBP6Q7Z6E9 1792 aaKnown RBP22.7■■□□□ 1.22
COL7A1-209ENST00000474432 KIAA0100Q14667 2235 aaKnown RBP22.69■■□□□ 1.22
COL7A1-209ENST00000474432 FLT1P17948 1338 aa22.69■■□□□ 1.22
COL7A1-209ENST00000474432 HSP90AB4PQ58FF6 505 aa22.69■■□□□ 1.22
COL7A1-209ENST00000474432 METTL16Q86W50 562 aaKnown RBP22.69■■□□□ 1.22
COL7A1-209ENST00000474432 MAPKAPK5Q8IW41 473 aa22.69■■□□□ 1.22
COL7A1-209ENST00000474432 DNAJC18Q9H819 358 aa22.69■■□□□ 1.22
COL7A1-209ENST00000474432 PTCH2Q9Y6C5 1203 aa22.69■■□□□ 1.22
COL7A1-209ENST00000474432 CYP2C8P10632 490 aa22.68■■□□□ 1.22
COL7A1-209ENST00000474432 PLCG2P16885 1265 aa22.68■■□□□ 1.22
COL7A1-209ENST00000474432 CYP7A1P22680 504 aa22.68■■□□□ 1.22
COL7A1-209ENST00000474432 CAP2P40123 477 aa22.68■■□□□ 1.22
COL7A1-209ENST00000474432 JAG1P78504 1218 aa22.68■■□□□ 1.22
COL7A1-209ENST00000474432 NOL10Q9BSC4 688 aaKnown RBP22.68■■□□□ 1.22
COL7A1-209ENST00000474432 IDH1O75874 414 aaKnown RBP22.67■■□□□ 1.22
COL7A1-209ENST00000474432 BCRP11274 1271 aa22.67■■□□□ 1.22
COL7A1-209ENST00000474432 PDE3AQ14432 1141 aa22.67■■□□□ 1.22
COL7A1-209ENST00000474432 KIF1BPQ96EK5 621 aa22.67■■□□□ 1.22
COL7A1-209ENST00000474432 DHX36Q9H2U1 1008 aaKnown RBP22.67■■□□□ 1.22
COL7A1-209ENST00000474432 PI4KBQ9UBF8 816 aa22.67■■□□□ 1.22
COL7A1-209ENST00000474432 HERC5Q9UII4 1024 aaKnown RBP22.67■■□□□ 1.22
COL7A1-209ENST00000474432 LOC285556D6RIA3 1793 aa22.66■■□□□ 1.22
COL7A1-209ENST00000474432 POTEFA5A3E0 1075 aa22.66■■□□□ 1.22
COL7A1-209ENST00000474432 TRIM75PA6NK02 468 aa22.66■■□□□ 1.22
COL7A1-209ENST00000474432 APBB1O00213 710 aa22.66■■□□□ 1.22
COL7A1-209ENST00000474432 FASTKD5Q7L8L6 764 aaKnown RBP22.66■■□□□ 1.22
COL7A1-209ENST00000474432 MAGEB6Q8N7X4 407 aa22.66■■□□□ 1.22
COL7A1-209ENST00000474432 PALD1Q9ULE6 856 aa22.66■■□□□ 1.22
COL7A1-209ENST00000474432 MYH1P12882 1939 aa22.66■■□□□ 1.22
COL7A1-209ENST00000474432 MGAMO43451 1857 aa22.65■■□□□ 1.22
COL7A1-209ENST00000474432 HMMRO75330 724 aa22.65■■□□□ 1.22
COL7A1-209ENST00000474432 ARHGEF6Q15052 776 aa22.65■■□□□ 1.22
COL7A1-209ENST00000474432 GADL1Q6ZQY3 521 aa22.65■■□□□ 1.22
COL7A1-209ENST00000474432 MIGA1Q8NAN2 632 aa22.65■■□□□ 1.22
COL7A1-209ENST00000474432 TRIM47Q96LD4 638 aa22.65■■□□□ 1.22
COL7A1-209ENST00000474432 SLC45A1Q9Y2W3 748 aa22.65■■□□□ 1.22
COL7A1-209ENST00000474432 SHROOM1Q2M3G4 852 aaPredicted RBP22.64■■□□□ 1.21
COL7A1-209ENST00000474432 CLASRPQ8N2M8 674 aaKnown RBP22.64■■□□□ 1.21
COL7A1-209ENST00000474432 ZNF333Q96JL9 665 aa22.64■■□□□ 1.21
COL7A1-209ENST00000474432 PARK7Q99497 189 aaKnown RBP22.64■■□□□ 1.21
COL7A1-209ENST00000474432 RAB11FIP3O75154 756 aa22.63■■□□□ 1.21
COL7A1-209ENST00000474432 ECM2O94769 699 aaPredicted RBP22.63■■□□□ 1.21
COL7A1-209ENST00000474432 SPP2Q13103 211 aa22.63■■□□□ 1.21
COL7A1-209ENST00000474432 TREML2Q5T2D2 321 aa22.63■■□□□ 1.21
COL7A1-209ENST00000474432 FOXP4Q8IVH2 680 aaPredicted RBP22.63■■□□□ 1.21
COL7A1-209ENST00000474432 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.63■■□□□ 1.21
COL7A1-209ENST00000474432 RIOK1Q9BRS2 568 aaKnown RBP22.63■■□□□ 1.21
COL7A1-209ENST00000474432 SAP30BPQ9UHR5 308 aaKnown RBP22.63■■□□□ 1.21
COL7A1-209ENST00000474432 GNRH1P01148 92 aa22.62■■□□□ 1.21
COL7A1-209ENST00000474432 PSMC4P43686 418 aa22.62■■□□□ 1.21
COL7A1-209ENST00000474432 MAP3K12Q12852 859 aa22.62■■□□□ 1.21
COL7A1-209ENST00000474432 KIF22Q14807 665 aa22.62■■□□□ 1.21
COL7A1-209ENST00000474432 ZNF280CQ8ND82 737 aa22.62■■□□□ 1.21
COL7A1-209ENST00000474432 AGTPBP1Q9UPW5 1226 aa22.62■■□□□ 1.21
COL7A1-209ENST00000474432 BRCA2P51587 3418 aa22.62■■□□□ 1.21
COL7A1-209ENST00000474432 DDX60LQ5H9U9 1706 aaKnown RBP22.62■■□□□ 1.21
COL7A1-209ENST00000474432 OSBPP22059 807 aa22.61■■□□□ 1.21
COL7A1-209ENST00000474432 TMED8Q6PL24 325 aaPredicted RBP22.61■■□□□ 1.21
COL7A1-209ENST00000474432 EDC3Q96F86 508 aaKnown RBP22.61■■□□□ 1.21
COL7A1-209ENST00000474432 CHMP4BQ9H444 224 aaKnown RBP22.61■■□□□ 1.21
COL7A1-209ENST00000474432 USP17L5A8MUK1 530 aa22.6■■□□□ 1.21
COL7A1-209ENST00000474432 SH3D19Q5HYK7 790 aa22.6■■□□□ 1.21
COL7A1-209ENST00000474432 PROCA1Q8NCQ7 364 aaPredicted RBP22.6■■□□□ 1.21
COL7A1-209ENST00000474432 SRRDQ9UH36 339 aa22.6■■□□□ 1.21
COL7A1-209ENST00000474432 TCRBV5S4A2TA0A5A2 114 aa22.59■■□□□ 1.21
COL7A1-209ENST00000474432 IFIT2P09913 472 aaKnown RBP22.59■■□□□ 1.21
COL7A1-209ENST00000474432 PDE6AP16499 860 aa22.59■■□□□ 1.21
COL7A1-209ENST00000474432 PRMT2P55345 433 aa22.59■■□□□ 1.21
COL7A1-209ENST00000474432 SLC4A8Q2Y0W8 1093 aa22.59■■□□□ 1.21
COL7A1-209ENST00000474432 SLC9C1Q4G0N8 1177 aa22.59■■□□□ 1.21
COL7A1-209ENST00000474432 SH3TC2Q8TF17 1288 aa22.59■■□□□ 1.21
COL7A1-209ENST00000474432 WDR18Q9BV38 432 aa22.59■■□□□ 1.21
COL7A1-209ENST00000474432 TBC1D2Q9BYX2 928 aa22.59■■□□□ 1.21
COL7A1-209ENST00000474432 GOLIM4O00461 696 aa22.58■■□□□ 1.21
COL7A1-209ENST00000474432 EN2P19622 333 aaPredicted RBP22.58■■□□□ 1.21
COL7A1-209ENST00000474432 HMGCS2P54868 508 aa22.58■■□□□ 1.21
COL7A1-209ENST00000474432 TTF1Q15361 905 aaPredicted RBP22.58■■□□□ 1.21
COL7A1-209ENST00000474432 CERS3Q8IU89 383 aa22.58■■□□□ 1.21
COL7A1-209ENST00000474432 DOCK3Q8IZD9 2030 aa22.58■■□□□ 1.2
COL7A1-209ENST00000474432 GDF11O95390 407 aa22.57■■□□□ 1.2
COL7A1-209ENST00000474432 ATP5JP18859 108 aa22.57■■□□□ 1.2
COL7A1-209ENST00000474432 SLC9C2Q5TAH2 1124 aa22.57■■□□□ 1.2
COL7A1-209ENST00000474432 TATDN1Q6P1N9 297 aa22.57■■□□□ 1.2
COL7A1-209ENST00000474432 DNAJC2Q99543 621 aaKnown RBP22.57■■□□□ 1.2
COL7A1-209ENST00000474432 FMNL1O95466 1100 aaPredicted RBP22.56■■□□□ 1.2
COL7A1-209ENST00000474432 ASNSP08243 561 aa22.56■■□□□ 1.2
COL7A1-209ENST00000474432 USP5P45974 858 aa22.56■■□□□ 1.2
COL7A1-209ENST00000474432 SLFNL1Q499Z3 407 aa22.56■■□□□ 1.2
COL7A1-209ENST00000474432 CRACR2BQ8N4Y2 399 aaPredicted RBP22.56■■□□□ 1.2
COL7A1-209ENST00000474432 BCL11AQ9H165 835 aa22.56■■□□□ 1.2
COL7A1-209ENST00000474432 ZBTB21Q9ULJ3 1066 aa22.56■■□□□ 1.2
COL7A1-209ENST00000474432 GABRQQ9UN88 632 aa22.56■■□□□ 1.2
COL7A1-209ENST00000474432 MKI67P46013 3256 aaKnown RBP22.56■■□□□ 1.2
COL7A1-209ENST00000474432 NAV1Q8NEY1 1877 aa22.56■■□□□ 1.2
COL7A1-209ENST00000474432 ZNF532Q9HCE3 1301 aa22.56■■□□□ 1.2
COL7A1-209ENST00000474432 SMARCA5O60264 1052 aaPredicted RBP22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms