RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 NOL9Q5SY16 702 aaKnown RBP17.07■□□□□ 0.32
BRCA1-211ENST00000472490 ERO1BQ86YB8 467 aa17.07■□□□□ 0.32
BRCA1-211ENST00000472490 ZKSCAN4Q969J2 545 aaPredicted RBP17.07■□□□□ 0.32
BRCA1-211ENST00000472490 RILPL2Q969X0 211 aa17.07■□□□□ 0.32
BRCA1-211ENST00000472490 OPTNQ96CV9 577 aa17.07■□□□□ 0.32
BRCA1-211ENST00000472490 WNK4Q96J92 1243 aa17.07■□□□□ 0.32
BRCA1-211ENST00000472490 PICK1Q9NRD5 415 aa17.07■□□□□ 0.32
BRCA1-211ENST00000472490 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.07■□□□□ 0.32
BRCA1-211ENST00000472490 SAP30BPQ9UHR5 308 aaKnown RBP17.07■□□□□ 0.32
BRCA1-211ENST00000472490 TAOK2Q9UL54 1235 aa17.07■□□□□ 0.32
BRCA1-211ENST00000472490 MANSC4A6NHS7 340 aaPredicted RBP17.06■□□□□ 0.32
BRCA1-211ENST00000472490 SPDYE5A6NIY4 337 aa17.06■□□□□ 0.32
BRCA1-211ENST00000472490 PHF20L1A8MW92 1017 aa17.06■□□□□ 0.32
BRCA1-211ENST00000472490 DSG3P32926 999 aa17.06■□□□□ 0.32
BRCA1-211ENST00000472490 SLFNL1Q499Z3 407 aa17.06■□□□□ 0.32
BRCA1-211ENST00000472490 SDR42E1Q8WUS8 393 aa17.06■□□□□ 0.32
BRCA1-211ENST00000472490 EHD4Q9H223 541 aa17.06■□□□□ 0.32
BRCA1-211ENST00000472490 DCP1AQ9NPI6 582 aaPredicted RBP17.06■□□□□ 0.32
BRCA1-211ENST00000472490 WBP1LQ9NX94 342 aa17.06■□□□□ 0.32
BRCA1-211ENST00000472490 MCM9Q9NXL9 1143 aa17.06■□□□□ 0.32
BRCA1-211ENST00000472490 SERPINB13Q9UIV8 391 aa17.06■□□□□ 0.32
BRCA1-211ENST00000472490 SLC4A4Q9Y6R1 1079 aa17.06■□□□□ 0.32
BRCA1-211ENST00000472490 CHGBP05060 677 aa17.05■□□□□ 0.32
BRCA1-211ENST00000472490 INPP5BP32019 993 aa17.05■□□□□ 0.32
BRCA1-211ENST00000472490 PPATQ06203 517 aa17.05■□□□□ 0.32
BRCA1-211ENST00000472490 MKRN3Q13064 507 aaKnown RBP17.05■□□□□ 0.32
BRCA1-211ENST00000472490 METTL16Q86W50 562 aaKnown RBP17.05■□□□□ 0.32
BRCA1-211ENST00000472490 SCYL3Q8IZE3 742 aa17.05■□□□□ 0.32
BRCA1-211ENST00000472490 OSBP2Q969R2 916 aa17.05■□□□□ 0.32
BRCA1-211ENST00000472490 OTUD5Q96G74 571 aa17.05■□□□□ 0.32
BRCA1-211ENST00000472490 STRBPQ96SI9 672 aaKnown RBP17.05■□□□□ 0.32
BRCA1-211ENST00000472490 SNCAIPQ9Y6H5 919 aa17.05■□□□□ 0.32
BRCA1-211ENST00000472490 HIP1O00291 1037 aa17.04■□□□□ 0.32
BRCA1-211ENST00000472490 GPAA1O43292 621 aa17.04■□□□□ 0.32
BRCA1-211ENST00000472490 HSPA1AP0DMV8 641 aaKnown RBP17.04■□□□□ 0.32
BRCA1-211ENST00000472490 HSPA1BP0DMV9 641 aaKnown RBP17.04■□□□□ 0.32
BRCA1-211ENST00000472490 GTF2A2P52657 109 aa17.04■□□□□ 0.32
BRCA1-211ENST00000472490 ZMYM1Q5SVZ6 1142 aa17.04■□□□□ 0.32
BRCA1-211ENST00000472490 GIMAP6Q6P9H5 292 aa17.04■□□□□ 0.32
BRCA1-211ENST00000472490 NACAP1Q9BZK3 213 aa17.04■□□□□ 0.32
BRCA1-211ENST00000472490 CEP350Q5VT06 3117 aa17.04■□□□□ 0.32
BRCA1-211ENST00000472490 PDE4AP27815 886 aa17.03■□□□□ 0.32
BRCA1-211ENST00000472490 TM4SF4P48230 202 aa17.03■□□□□ 0.32
BRCA1-211ENST00000472490 PPIL2Q13356 520 aa17.03■□□□□ 0.32
BRCA1-211ENST00000472490 OTUD7BQ6GQQ9 843 aa17.03■□□□□ 0.32
BRCA1-211ENST00000472490 TBC1D2Q9BYX2 928 aa17.03■□□□□ 0.32
BRCA1-211ENST00000472490 HELLSQ9NRZ9 838 aa17.03■□□□□ 0.32
BRCA1-211ENST00000472490 GINM1Q9NU53 330 aa17.03■□□□□ 0.32
BRCA1-211ENST00000472490 ARPP21Q9UBL0 812 aaPredicted RBP17.03■□□□□ 0.32
BRCA1-211ENST00000472490 THSD7BQ9C0I4 1608 aa17.03■□□□□ 0.32
BRCA1-211ENST00000472490 PRKAB2O43741 272 aa17.02■□□□□ 0.32
BRCA1-211ENST00000472490 ALDH1A1P00352 501 aa17.02■□□□□ 0.32
BRCA1-211ENST00000472490 APPP05067 770 aa17.02■□□□□ 0.32
BRCA1-211ENST00000472490 CAP2P40123 477 aa17.02■□□□□ 0.32
BRCA1-211ENST00000472490 ZIC5Q96T25 663 aa17.02■□□□□ 0.32
BRCA1-211ENST00000472490 SAGE1Q9NXZ1 904 aa17.02■□□□□ 0.32
BRCA1-211ENST00000472490 FAM196BA6NMK8 535 aa17.01■□□□□ 0.31
BRCA1-211ENST00000472490 PATL2C9JE40 543 aaKnown RBP17.01■□□□□ 0.31
BRCA1-211ENST00000472490 M0R2C6 588 aa17.01■□□□□ 0.31
BRCA1-211ENST00000472490 ASNSP08243 561 aa17.01■□□□□ 0.31
BRCA1-211ENST00000472490 PLCD1P51178 756 aa17.01■□□□□ 0.31
BRCA1-211ENST00000472490 MFAP1P55081 439 aaKnown RBP17.01■□□□□ 0.31
BRCA1-211ENST00000472490 SNAPC2Q13487 334 aa17.01■□□□□ 0.31
BRCA1-211ENST00000472490 SLC4A8Q2Y0W8 1093 aa17.01■□□□□ 0.31
BRCA1-211ENST00000472490 MCMDC2Q4G0Z9 681 aa17.01■□□□□ 0.31
BRCA1-211ENST00000472490 TTC22Q5TAA0 569 aa17.01■□□□□ 0.31
BRCA1-211ENST00000472490 SWAP70Q9UH65 585 aa17.01■□□□□ 0.31
BRCA1-211ENST00000472490 MYO5AQ9Y4I1 1855 aaKnown RBP17.01■□□□□ 0.31
BRCA1-211ENST00000472490 USP17L12C9JPN9 530 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 USP17L21D6R901 530 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 IRF6O14896 467 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 CETPP11597 493 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 PTPRAP18433 802 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 SDSP20132 328 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 GJA5P36382 358 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 TDO2P48775 406 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 CTCFP49711 727 aaPredicted RBP17■□□□□ 0.31
BRCA1-211ENST00000472490 TATDN1Q6P1N9 297 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 DIAPH3Q9NSV4 1193 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 ZHX2Q9Y6X8 837 aa17■□□□□ 0.31
BRCA1-211ENST00000472490 TESPA1A2RU30 521 aaPredicted RBP16.99■□□□□ 0.31
BRCA1-211ENST00000472490 GSG1L2A8MUP6 293 aa16.99■□□□□ 0.31
BRCA1-211ENST00000472490 CXCL11O14625 94 aa16.99■□□□□ 0.31
BRCA1-211ENST00000472490 SBK1Q52WX2 424 aa16.99■□□□□ 0.31
BRCA1-211ENST00000472490 C12orf60Q5U649 245 aa16.99■□□□□ 0.31
BRCA1-211ENST00000472490 MS4A4AQ96JQ5 239 aa16.99■□□□□ 0.31
BRCA1-211ENST00000472490 SEC62Q99442 399 aaKnown RBP16.99■□□□□ 0.31
BRCA1-211ENST00000472490 DNAJC18Q9H819 358 aa16.99■□□□□ 0.31
BRCA1-211ENST00000472490 AS3MTQ9HBK9 375 aa16.99■□□□□ 0.31
BRCA1-211ENST00000472490 ZNF287Q9HBT7 754 aa16.99■□□□□ 0.31
BRCA1-211ENST00000472490 USP17L5A8MUK1 530 aa16.98■□□□□ 0.31
BRCA1-211ENST00000472490 SLURP2P0DP57 97 aa16.98■□□□□ 0.31
BRCA1-211ENST00000472490 GABPAQ06546 454 aa16.98■□□□□ 0.31
BRCA1-211ENST00000472490 CERKLQ49MI3 558 aaPredicted RBP16.98■□□□□ 0.31
BRCA1-211ENST00000472490 CTR9Q6PD62 1173 aa16.98■□□□□ 0.31
BRCA1-211ENST00000472490 IFNL1Q8IU54 200 aa16.98■□□□□ 0.31
BRCA1-211ENST00000472490 NAPBQ9H115 298 aa16.98■□□□□ 0.31
BRCA1-211ENST00000472490 CABP5Q9NP86 173 aa16.98■□□□□ 0.31
BRCA1-211ENST00000472490 RNF186Q9NXI6 227 aa16.98■□□□□ 0.31
BRCA1-211ENST00000472490 PPP4R2Q9NY27 417 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms