RNA–Protein interactions for RNA: ENST00000472282.5

SMC4-213, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 667 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-213ENST00000472282 PPP2R3BQ9Y5P8 575 aa11.28□□□□□ -0.6
SMC4-213ENST00000472282 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.28□□□□□ -0.6
SMC4-213ENST00000472282 DOCK2Q92608 1830 aa11.28□□□□□ -0.6
SMC4-213ENST00000472282 FRAT2O75474 233 aaPredicted RBP11.27□□□□□ -0.61
SMC4-213ENST00000472282 CIAO1O76071 339 aa11.27□□□□□ -0.61
SMC4-213ENST00000472282 IFIT1P09914 478 aaKnown RBP11.27□□□□□ -0.61
SMC4-213ENST00000472282 GJA5P36382 358 aa11.27□□□□□ -0.61
SMC4-213ENST00000472282 RPAP2Q8IXW5 612 aaPredicted RBP11.27□□□□□ -0.61
SMC4-213ENST00000472282 EXOC6Q8TAG9 804 aa11.27□□□□□ -0.61
SMC4-213ENST00000472282 WNK4Q96J92 1243 aa11.27□□□□□ -0.61
SMC4-213ENST00000472282 TMEM39BQ9GZU3 492 aa11.27□□□□□ -0.61
SMC4-213ENST00000472282 ZSWIM8A7E2V4 1837 aa11.27□□□□□ -0.61
SMC4-213ENST00000472282 SLC5A1P13866 664 aa11.26□□□□□ -0.61
SMC4-213ENST00000472282 ADORA1P30542 326 aa11.26□□□□□ -0.61
SMC4-213ENST00000472282 IL15P40933 162 aaPredicted RBP11.26□□□□□ -0.61
SMC4-213ENST00000472282 TJAP1Q5JTD0 557 aa11.26□□□□□ -0.61
SMC4-213ENST00000472282 SIRT2Q8IXJ6 389 aa11.26□□□□□ -0.61
SMC4-213ENST00000472282 LPIN2Q92539 896 aa11.26□□□□□ -0.61
SMC4-213ENST00000472282 PPP1R12BO60237 982 aaPredicted RBP11.25□□□□□ -0.61
SMC4-213ENST00000472282 HMMRO75330 724 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 SURF6O75683 361 aaKnown RBP11.25□□□□□ -0.61
SMC4-213ENST00000472282 PHKA1P46020 1223 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 G3BP1Q13283 466 aaKnown RBP eCLIP11.25□□□□□ -0.611e-39■■■■■ 140
SMC4-213ENST00000472282 OS9Q13438 667 aaPredicted RBP11.25□□□□□ -0.61
SMC4-213ENST00000472282 LAPTM4AQ15012 233 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 ATP2B3Q16720 1220 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 SUPT20HL1Q3ZLR7 823 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 APOBEC3HQ6NTF7 200 aaKnown RBP11.25□□□□□ -0.61
SMC4-213ENST00000472282 TBC1D22AQ8WUA7 517 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 ZNF296Q8WUU4 475 aaPredicted RBP11.25□□□□□ -0.61
SMC4-213ENST00000472282 TEKT1Q969V4 418 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 SLC10A4Q96EP9 437 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 MTRQ99707 1265 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 EXOC6BQ9Y2D4 811 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 PCDHB15Q9Y5E8 787 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 CDK5RAP2Q96SN8 1893 aa11.25□□□□□ -0.61
SMC4-213ENST00000472282 IGF2BP3O00425 579 aaKnown RBP eCLIP11.24□□□□□ -0.61
SMC4-213ENST00000472282 PRDX5P30044 214 aa11.24□□□□□ -0.61
SMC4-213ENST00000472282 HDLBPQ00341 1268 aaKnown RBP11.24□□□□□ -0.61
SMC4-213ENST00000472282 TFCP2Q12800 502 aa11.24□□□□□ -0.61
SMC4-213ENST00000472282 DIXDC1Q155Q3 683 aa11.24□□□□□ -0.61
SMC4-213ENST00000472282 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.24□□□□□ -0.61
SMC4-213ENST00000472282 SLF2Q8IX21 1173 aa11.24□□□□□ -0.61
SMC4-213ENST00000472282 ZDHHC15Q96MV8 337 aa11.24□□□□□ -0.61
SMC4-213ENST00000472282 ELP3Q9H9T3 547 aa11.24□□□□□ -0.61
SMC4-213ENST00000472282 CEP126Q9P2H0 1117 aa11.24□□□□□ -0.61
SMC4-213ENST00000472282 NOP58Q9Y2X3 529 aaKnown RBP11.24□□□□□ -0.61
SMC4-213ENST00000472282 C3orf80F5H4A9 247 aa11.23□□□□□ -0.61
SMC4-213ENST00000472282 GPR25O00155 361 aa11.23□□□□□ -0.61
SMC4-213ENST00000472282 ZBTB48P10074 688 aaPredicted RBP11.23□□□□□ -0.61
SMC4-213ENST00000472282 IREB2P48200 963 aaKnown RBP11.23□□□□□ -0.61
SMC4-213ENST00000472282 TIMM10P62072 90 aa11.23□□□□□ -0.61
SMC4-213ENST00000472282 SREBF2Q12772 1141 aa11.23□□□□□ -0.61
SMC4-213ENST00000472282 TNFAIP1Q13829 316 aa11.23□□□□□ -0.61
SMC4-213ENST00000472282 TRAF7Q6Q0C0 670 aa11.23□□□□□ -0.61
SMC4-213ENST00000472282 PADI6Q6TGC4 694 aa11.23□□□□□ -0.61
SMC4-213ENST00000472282 CTU1Q7Z7A3 348 aaKnown RBP11.23□□□□□ -0.61
SMC4-213ENST00000472282 ANKRD13AQ8IZ07 590 aa11.23□□□□□ -0.61
SMC4-213ENST00000472282 DAGLAQ9Y4D2 1042 aa11.23□□□□□ -0.61
SMC4-213ENST00000472282 PTPRFP10586 1907 aa11.23□□□□□ -0.61
SMC4-213ENST00000472282 MANSC4A6NHS7 340 aaPredicted RBP11.22□□□□□ -0.61
SMC4-213ENST00000472282 AAMPQ13685 434 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 VGLL4Q14135 290 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 CCDC102BQ68D86 513 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 HHIPL2Q6UWX4 724 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 TTC13Q8NBP0 860 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.22□□□□□ -0.61
SMC4-213ENST00000472282 WDR66Q8TBY9 1149 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 PHIPQ8WWQ0 1821 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 OPTNQ96CV9 577 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 ATAD5Q96QE3 1844 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 PTPN18Q99952 460 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 MRIQ9BWK5 157 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 CFHR5Q9BXR6 569 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 SUGT1Q9Y2Z0 365 aa11.22□□□□□ -0.61
SMC4-213ENST00000472282 MAST2Q6P0Q8 1798 aa11.21□□□□□ -0.61
SMC4-213ENST00000472282 MAST3O60307 1309 aa11.21□□□□□ -0.61
SMC4-213ENST00000472282 A0A1B0GUL7 405 aa11.21□□□□□ -0.61
SMC4-213ENST00000472282 APBB1O00213 710 aa11.21□□□□□ -0.61
SMC4-213ENST00000472282 TNNI2P48788 182 aa11.21□□□□□ -0.61
SMC4-213ENST00000472282 RGS19P49795 217 aa11.21□□□□□ -0.61
SMC4-213ENST00000472282 CAP1Q01518 475 aa11.21□□□□□ -0.61
SMC4-213ENST00000472282 NFIAQ12857 509 aa11.21□□□□□ -0.61
SMC4-213ENST00000472282 CDC42EP5Q6NZY7 148 aa11.21□□□□□ -0.61
SMC4-213ENST00000472282 AKAP2Q9Y2D5 859 aa11.21□□□□□ -0.61
SMC4-213ENST00000472282 MYH7P12883 1935 aa11.21□□□□□ -0.62
SMC4-213ENST00000472282 DOCK1Q14185 1865 aa11.21□□□□□ -0.62
SMC4-213ENST00000472282 FOCADQ5VW36 1801 aa11.21□□□□□ -0.62
SMC4-213ENST00000472282 RPAP1Q9BWH6 1393 aaPredicted RBP11.2□□□□□ -0.62
SMC4-213ENST00000472282 SALL1Q9NSC2 1324 aa11.2□□□□□ -0.62
SMC4-213ENST00000472282 UNCXA6NJT0 531 aa11.2□□□□□ -0.62
SMC4-213ENST00000472282 SOX10P56693 466 aa11.2□□□□□ -0.62
SMC4-213ENST00000472282 RASGRF1Q13972 1273 aa11.2□□□□□ -0.62
SMC4-213ENST00000472282 HSP90AB4PQ58FF6 505 aa11.2□□□□□ -0.62
SMC4-213ENST00000472282 NOM1Q5C9Z4 860 aaKnown RBP11.2□□□□□ -0.62
SMC4-213ENST00000472282 FAM83AQ86UY5 434 aa11.2□□□□□ -0.62
SMC4-213ENST00000472282 ERC1Q8IUD2 1116 aa11.2□□□□□ -0.62
SMC4-213ENST00000472282 XAGE2Q96GT9 111 aa11.2□□□□□ -0.62
SMC4-213ENST00000472282 NPDC1Q9NQX5 325 aaPredicted RBP11.2□□□□□ -0.62
SMC4-213ENST00000472282 SNCAIPQ9Y6H5 919 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms