RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 F8W031 263 aaPredicted RBP11.01□□□□□ -0.65
VPS52-216ENST00000471309 SMIM22K7EJ46 135 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 USP17L8P0C7I0 530 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 ZSCAN22P10073 491 aaPredicted RBP11.01□□□□□ -0.65
VPS52-216ENST00000471309 PTMSP20962 102 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 IARSP41252 1262 aaKnown RBP11.01□□□□□ -0.65
VPS52-216ENST00000471309 CRKP46108 304 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 HMGN5P82970 282 aaKnown RBP11.01□□□□□ -0.65
VPS52-216ENST00000471309 PDE4BQ07343 736 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 MAPKAPK5Q8IW41 473 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 TMTC2Q8N394 836 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 LARGE2Q8N3Y3 721 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 UBAC1Q9BSL1 405 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 TAOK3Q9H2K8 898 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 ZNF277Q9NRM2 450 aaPredicted RBP11.01□□□□□ -0.65
VPS52-216ENST00000471309 TNKSO95271 1327 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 LTBP3Q9NS15 1303 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 CCDC69A6NI79 296 aa11□□□□□ -0.65
VPS52-216ENST00000471309 ZBTB43O43298 467 aa11□□□□□ -0.65
VPS52-216ENST00000471309 JAK2O60674 1132 aa11□□□□□ -0.65
VPS52-216ENST00000471309 BAG4O95429 457 aaKnown RBP11□□□□□ -0.65
VPS52-216ENST00000471309 CTDNEP1O95476 244 aa11□□□□□ -0.65
VPS52-216ENST00000471309 METAP2P50579 478 aaKnown RBP eCLIP11□□□□□ -0.65
VPS52-216ENST00000471309 SCNN1DP51172 638 aa11□□□□□ -0.65
VPS52-216ENST00000471309 CCT2P78371 535 aaKnown RBP11□□□□□ -0.65
VPS52-216ENST00000471309 EVX2Q03828 476 aa11□□□□□ -0.65
VPS52-216ENST00000471309 WTAPQ15007 396 aa11□□□□□ -0.65
VPS52-216ENST00000471309 SEC23AQ15436 765 aa11□□□□□ -0.65
VPS52-216ENST00000471309 APOBEC3HQ6NTF7 200 aaKnown RBP11□□□□□ -0.65
VPS52-216ENST00000471309 NFXL1Q6ZNB6 911 aa11□□□□□ -0.65
VPS52-216ENST00000471309 IQCA1Q86XH1 822 aa11□□□□□ -0.65
VPS52-216ENST00000471309 KIAA0825Q8IV33 1275 aa11□□□□□ -0.65
VPS52-216ENST00000471309 STK11IPQ8N1F8 1099 aa11□□□□□ -0.65
VPS52-216ENST00000471309 ZSCAN10Q96SZ4 725 aaPredicted RBP11□□□□□ -0.65
VPS52-216ENST00000471309 ZNF287Q9HBT7 754 aa11□□□□□ -0.65
VPS52-216ENST00000471309 NCOA5Q9HCD5 579 aaKnown RBP11□□□□□ -0.65
VPS52-216ENST00000471309 NAP1L2Q9ULW6 460 aaPredicted RBP11□□□□□ -0.65
VPS52-216ENST00000471309 MTMR6Q9Y217 621 aa11□□□□□ -0.65
VPS52-216ENST00000471309 KIF3AQ9Y496 699 aa11□□□□□ -0.65
VPS52-216ENST00000471309 COL2A1P02458 1487 aaPredicted RBP11□□□□□ -0.65
VPS52-216ENST00000471309 RANBP6O60518 1105 aaKnown RBP10.99□□□□□ -0.65
VPS52-216ENST00000471309 PRDM1O75626 825 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 WDHD1O75717 1129 aaPredicted RBP10.99□□□□□ -0.65
VPS52-216ENST00000471309 CDKL5O76039 1030 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 F13A1P00488 732 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 POLR3DP05423 398 aaPredicted RBP10.99□□□□□ -0.65
VPS52-216ENST00000471309 CDC42EP5Q6NZY7 148 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 RSBN1LQ6PCB5 846 aaPredicted RBP10.99□□□□□ -0.65
VPS52-216ENST00000471309 C16orf86Q6ZW13 317 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 NIM1KQ8IY84 436 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 SENP2Q9HC62 589 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 USP40Q9NVE5 1235 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 PPP1R1BQ9UD71 204 aaPredicted RBP10.99□□□□□ -0.65
VPS52-216ENST00000471309 ZNRF3Q9ULT6 936 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 SLC12A7Q9Y666 1083 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 SIPA1L1O43166 1804 aa10.99□□□□□ -0.65
VPS52-216ENST00000471309 MYH8P13535 1937 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 GOLGA8AA7E2F4 631 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 GOLGA6L22H0YM25 854 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 NFKBIEO00221 500 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 CPLX1O14810 134 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 VIL1P09327 827 aaKnown RBP10.98□□□□□ -0.65
VPS52-216ENST00000471309 PLCD1P51178 756 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 PPP2R5BQ15173 497 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 LARP1BQ659C4 914 aaKnown RBP10.98□□□□□ -0.65
VPS52-216ENST00000471309 CPLX2Q6PUV4 134 aaKnown RBP10.98□□□□□ -0.65
VPS52-216ENST00000471309 SYNE3Q6ZMZ3 975 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 MICU3Q86XE3 530 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 KLHL34Q8N239 644 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 ENAHQ8N8S7 591 aaPredicted RBP10.98□□□□□ -0.65
VPS52-216ENST00000471309 FAM184AQ8NB25 1140 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 RGS22Q8NE09 1264 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 ZKSCAN3Q9BRR0 538 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 OSBPL5Q9H0X9 879 aaPredicted RBP10.98□□□□□ -0.65
VPS52-216ENST00000471309 SAP30BPQ9UHR5 308 aaKnown RBP10.98□□□□□ -0.65
VPS52-216ENST00000471309 TAOK2Q9UL54 1235 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 ATP6V1DQ9Y5K8 247 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 STK36Q9NRP7 1315 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 PLIN4Q96Q06 1357 aa10.98□□□□□ -0.65
VPS52-216ENST00000471309 VPS37CA5D8V6 355 aaPredicted RBP10.97□□□□□ -0.65
VPS52-216ENST00000471309 TSPY2A6NKD2 308 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 PSMD14O00487 310 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 CALM1P0DP23 149 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 CALM2P0DP24 149 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 CALM3P0DP25 149 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 PICALMQ13492 652 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 CCDC178Q5BJE1 867 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 IFIT1BQ5T764 474 aaKnown RBP10.97□□□□□ -0.65
VPS52-216ENST00000471309 TTC6Q86TZ1 520 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 ZNF654Q8IZM8 581 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 DDX11Q96FC9 970 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 DYNLL2Q96FJ2 89 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 GMLQ99445 158 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 IDI2Q9BXS1 227 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 SPON1Q9HCB6 807 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 DDX4Q9NQI0 724 aaKnown RBP10.97□□□□□ -0.65
VPS52-216ENST00000471309 BCS1LQ9Y276 419 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 GREB1LQ9C091 1923 aaPredicted RBP10.97□□□□□ -0.65
VPS52-216ENST00000471309 MYH15Q9Y2K3 1946 aa10.97□□□□□ -0.65
VPS52-216ENST00000471309 CCDC196A0A1B0GTZ2 297 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms