RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 NCAPHQ15003 741 aa22.05■■□□□ 1.12
VIM-203ENST00000469543 TXNRD3Q86VQ6 643 aa22.05■■□□□ 1.12
VIM-203ENST00000469543 ZNF654Q8IZM8 581 aa22.05■■□□□ 1.12
VIM-203ENST00000469543 CRACR2BQ8N4Y2 399 aaPredicted RBP22.05■■□□□ 1.12
VIM-203ENST00000469543 NAT10Q9H0A0 1025 aaKnown RBP22.05■■□□□ 1.12
VIM-203ENST00000469543 TNKSO95271 1327 aa22.05■■□□□ 1.12
VIM-203ENST00000469543 BCL9LQ86UU0 1499 aa22.05■■□□□ 1.12
VIM-203ENST00000469543 ERICH2A1L162 156 aa22.04■■□□□ 1.12
VIM-203ENST00000469543 SMC2O95347 1197 aa22.04■■□□□ 1.12
VIM-203ENST00000469543 MMP1P03956 469 aa22.04■■□□□ 1.12
VIM-203ENST00000469543 SKILP12757 684 aa22.04■■□□□ 1.12
VIM-203ENST00000469543 UBAC1Q9BSL1 405 aa22.04■■□□□ 1.12
VIM-203ENST00000469543 PDCL3Q9H2J4 239 aa22.04■■□□□ 1.12
VIM-203ENST00000469543 USP49Q70CQ1 688 aa22.04■■□□□ 1.12
VIM-203ENST00000469543 HPSEQ9Y251 543 aa22.04■■□□□ 1.12
VIM-203ENST00000469543 ZNF652Q9Y2D9 606 aa22.04■■□□□ 1.12
VIM-203ENST00000469543 GNAT2P19087 354 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 METTL16Q86W50 562 aaKnown RBP22.03■■□□□ 1.12
VIM-203ENST00000469543 PDILTQ8N807 584 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 ZNF592Q92610 1267 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 C8orf37Q96NL8 207 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 HSD3B7Q9H2F3 369 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 BSDC1Q9NW68 430 aaPredicted RBP22.03■■□□□ 1.12
VIM-203ENST00000469543 SART3Q15020 963 aaKnown RBP22.03■■□□□ 1.12
VIM-203ENST00000469543 EARS2Q5JPH6 523 aaKnown RBP22.03■■□□□ 1.12
VIM-203ENST00000469543 ENAHQ8N8S7 591 aaPredicted RBP22.03■■□□□ 1.12
VIM-203ENST00000469543 PLCH1Q4KWH8 1693 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 ZNF804BA4D1E1 1349 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 NLRP12P59046 1061 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 TPD52L1Q16890 204 aaPredicted RBP22.03■■□□□ 1.12
VIM-203ENST00000469543 NOM1Q5C9Z4 860 aaKnown RBP22.03■■□□□ 1.12
VIM-203ENST00000469543 GRAMD1CQ8IYS0 662 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 CABP5Q9NP86 173 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 AATFQ9NY61 560 aaKnown RBP eCLIP22.03■■□□□ 1.12
VIM-203ENST00000469543 VPS54Q9P1Q0 977 aa22.03■■□□□ 1.12
VIM-203ENST00000469543 USP17L12C9JPN9 530 aa22.02■■□□□ 1.12
VIM-203ENST00000469543 USP17L21D6R901 530 aa22.02■■□□□ 1.12
VIM-203ENST00000469543 PPP6R2O75170 966 aa22.02■■□□□ 1.12
VIM-203ENST00000469543 CDC25BP30305 580 aa22.02■■□□□ 1.12
VIM-203ENST00000469543 CHAF1AQ13111 956 aaPredicted RBP22.02■■□□□ 1.12
VIM-203ENST00000469543 CAVIN4Q5BKX8 364 aa22.02■■□□□ 1.12
VIM-203ENST00000469543 KCNH3Q9ULD8 1083 aa22.02■■□□□ 1.12
VIM-203ENST00000469543 PHLPP1O60346 1717 aa22.02■■□□□ 1.12
VIM-203ENST00000469543 DOCK2Q92608 1830 aa22.02■■□□□ 1.12
VIM-203ENST00000469543 TNNT1P13805 278 aa22.02■■□□□ 1.11
VIM-203ENST00000469543 BMP6P22004 513 aa22.02■■□□□ 1.11
VIM-203ENST00000469543 PRDX5P30044 214 aa22.02■■□□□ 1.11
VIM-203ENST00000469543 RESP18Q5W5W9 173 aa22.02■■□□□ 1.11
VIM-203ENST00000469543 PLEKHA8P1O95397 391 aa22.01■■□□□ 1.11
VIM-203ENST00000469543 NAA30Q147X3 362 aaPredicted RBP22.01■■□□□ 1.11
VIM-203ENST00000469543 SEC23AQ15436 765 aa22.01■■□□□ 1.11
VIM-203ENST00000469543 TRIM22Q8IYM9 498 aa22.01■■□□□ 1.11
VIM-203ENST00000469543 PCDHA5Q9Y5H7 936 aa22.01■■□□□ 1.11
VIM-203ENST00000469543 BAZ2AQ9UIF9 1905 aaKnown RBP22.01■■□□□ 1.11
VIM-203ENST00000469543 CCZ1BP86790 482 aa22.01■■□□□ 1.11
VIM-203ENST00000469543 CCZ1P86791 482 aaPredicted RBP22.01■■□□□ 1.11
VIM-203ENST00000469543 SF3B3Q15393 1217 aaKnown RBP22.01■■□□□ 1.11
VIM-203ENST00000469543 CHD4Q14839 1912 aa22■■□□□ 1.11
VIM-203ENST00000469543 WNT7AO00755 349 aa22■■□□□ 1.11
VIM-203ENST00000469543 FAM47AQ5JRC9 791 aa22■■□□□ 1.11
VIM-203ENST00000469543 CLEC4GQ6UXB4 293 aa22■■□□□ 1.11
VIM-203ENST00000469543 DPF2Q92785 391 aa22■■□□□ 1.11
VIM-203ENST00000469543 EIF4ENIF1Q9NRA8 985 aaKnown RBP22■■□□□ 1.11
VIM-203ENST00000469543 V9GY48 417 aaPredicted RBP22■■□□□ 1.11
VIM-203ENST00000469543 ARAP2Q8WZ64 1704 aa22■■□□□ 1.11
VIM-203ENST00000469543 MYH2Q9UKX2 1941 aa22■■□□□ 1.11
VIM-203ENST00000469543 RTL9Q8NET4 1388 aa22■■□□□ 1.11
VIM-203ENST00000469543 CYP2D6P10635 497 aa22■■□□□ 1.11
VIM-203ENST00000469543 VEGFAP15692 232 aaPredicted RBP22■■□□□ 1.11
VIM-203ENST00000469543 RBM6P78332 1123 aaKnown RBP22■■□□□ 1.11
VIM-203ENST00000469543 PDE4BQ07343 736 aa22■■□□□ 1.11
VIM-203ENST00000469543 ZNF827Q17R98 1081 aa22■■□□□ 1.11
VIM-203ENST00000469543 TMC6Q7Z403 805 aa22■■□□□ 1.11
VIM-203ENST00000469543 CNNM3Q8NE01 707 aa22■■□□□ 1.11
VIM-203ENST00000469543 GNL3LQ9NVN8 582 aaKnown RBP22■■□□□ 1.11
VIM-203ENST00000469543 ECM29Q5VYK3 1845 aa21.99■■□□□ 1.11
VIM-203ENST00000469543 MECOMQ03112 1051 aa21.99■■□□□ 1.11
VIM-203ENST00000469543 UBE4AQ14139 1066 aa21.99■■□□□ 1.11
VIM-203ENST00000469543 CTR9Q6PD62 1173 aa21.99■■□□□ 1.11
VIM-203ENST00000469543 POLR2DO15514 142 aaKnown RBP21.99■■□□□ 1.11
VIM-203ENST00000469543 RPS8P62241 208 aaKnown RBP21.99■■□□□ 1.11
VIM-203ENST00000469543 BARGINQ6ZT62 677 aa21.99■■□□□ 1.11
VIM-203ENST00000469543 ESR2Q92731 530 aa21.99■■□□□ 1.11
VIM-203ENST00000469543 NGLY1Q96IV0 654 aa21.99■■□□□ 1.11
VIM-203ENST00000469543 WNK3Q9BYP7 1800 aa21.98■■□□□ 1.11
VIM-203ENST00000469543 GNPATO15228 680 aa21.98■■□□□ 1.11
VIM-203ENST00000469543 GOLGA8FQ08AF8 430 aa21.98■■□□□ 1.11
VIM-203ENST00000469543 GOLGA8DPQ0D2H9 430 aa21.98■■□□□ 1.11
VIM-203ENST00000469543 JMYQ8N9B5 988 aa21.98■■□□□ 1.11
VIM-203ENST00000469543 KRI1Q8N9T8 703 aaKnown RBP21.98■■□□□ 1.11
VIM-203ENST00000469543 SMARCC1Q92922 1105 aaPredicted RBP21.98■■□□□ 1.11
VIM-203ENST00000469543 ZSCAN10Q96SZ4 725 aaPredicted RBP21.98■■□□□ 1.11
VIM-203ENST00000469543 CICQ96RK0 1608 aaPredicted RBP21.98■■□□□ 1.11
VIM-203ENST00000469543 PRR29P0C7W0 189 aa21.98■■□□□ 1.11
VIM-203ENST00000469543 SAFBQ15424 915 aaKnown RBP eCLIP21.98■■□□□ 1.11
VIM-203ENST00000469543 PKN1Q16512 942 aa21.98■■□□□ 1.11
VIM-203ENST00000469543 ARMCX5Q6P1M9 558 aa21.98■■□□□ 1.11
VIM-203ENST00000469543 NBPF5PQ86XG9 351 aaPredicted RBP21.98■■□□□ 1.11
VIM-203ENST00000469543 RNF41Q9H4P4 317 aaPredicted RBP21.98■■□□□ 1.11
VIM-203ENST00000469543 TUBE1Q9UJT0 475 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms