RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 APBB1O00213 710 aa23.23■■□□□ 1.31
COL7A1-207ENST00000467985 C20orf194Q5TEA3 1177 aa23.23■■□□□ 1.31
COL7A1-207ENST00000467985 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.23■■□□□ 1.31
COL7A1-207ENST00000467985 TGFBRAP1Q8WUH2 860 aa23.23■■□□□ 1.31
COL7A1-207ENST00000467985 PARK7Q99497 189 aaKnown RBP23.23■■□□□ 1.31
COL7A1-207ENST00000467985 TBC1D2Q9BYX2 928 aa23.23■■□□□ 1.31
COL7A1-207ENST00000467985 FOCADQ5VW36 1801 aa23.23■■□□□ 1.31
COL7A1-207ENST00000467985 FLT1P17948 1338 aa23.23■■□□□ 1.31
COL7A1-207ENST00000467985 GNRH1P01148 92 aa23.22■■□□□ 1.31
COL7A1-207ENST00000467985 SLURP2P0DP57 97 aa23.22■■□□□ 1.31
COL7A1-207ENST00000467985 LACTBP83111 547 aaPredicted RBP23.22■■□□□ 1.31
COL7A1-207ENST00000467985 MAPKAPK5Q8IW41 473 aa23.22■■□□□ 1.31
COL7A1-207ENST00000467985 MAGEB6Q8N7X4 407 aa23.22■■□□□ 1.31
COL7A1-207ENST00000467985 CDK5RAP2Q96SN8 1893 aa23.22■■□□□ 1.31
COL7A1-207ENST00000467985 C17orf99Q6UX52 265 aa23.21■■□□□ 1.31
COL7A1-207ENST00000467985 FOXP4Q8IVH2 680 aaPredicted RBP23.21■■□□□ 1.31
COL7A1-207ENST00000467985 SLC45A1Q9Y2W3 748 aa23.21■■□□□ 1.31
COL7A1-207ENST00000467985 NDUFB9Q9Y6M9 179 aa23.21■■□□□ 1.31
COL7A1-207ENST00000467985 PHIPQ8WWQ0 1821 aa23.2■■□□□ 1.3
COL7A1-207ENST00000467985 FAM196BA6NMK8 535 aa23.2■■□□□ 1.3
COL7A1-207ENST00000467985 CAP2P40123 477 aa23.2■■□□□ 1.3
COL7A1-207ENST00000467985 GPAT2Q6NUI2 795 aa23.2■■□□□ 1.3
COL7A1-207ENST00000467985 TRIM34Q9BYJ4 488 aa23.2■■□□□ 1.3
COL7A1-207ENST00000467985 ANTXR1Q9H6X2 564 aa23.2■■□□□ 1.3
COL7A1-207ENST00000467985 TRIM75PA6NK02 468 aa23.19■■□□□ 1.3
COL7A1-207ENST00000467985 HLA-DOAP06340 250 aa23.19■■□□□ 1.3
COL7A1-207ENST00000467985 DYNLL1P63167 89 aaKnown RBP23.19■■□□□ 1.3
COL7A1-207ENST00000467985 GADL1Q6ZQY3 521 aa23.19■■□□□ 1.3
COL7A1-207ENST00000467985 METTL16Q86W50 562 aaKnown RBP23.19■■□□□ 1.3
COL7A1-207ENST00000467985 PTPRFP10586 1907 aa23.18■■□□□ 1.3
COL7A1-207ENST00000467985 ADGRA2Q96PE1 1338 aa23.18■■□□□ 1.3
COL7A1-207ENST00000467985 PRMT2P55345 433 aa23.18■■□□□ 1.3
COL7A1-207ENST00000467985 CAP1Q01518 475 aa23.18■■□□□ 1.3
COL7A1-207ENST00000467985 CRACR2BQ8N4Y2 399 aaPredicted RBP23.18■■□□□ 1.3
COL7A1-207ENST00000467985 MIGA1Q8NAN2 632 aa23.18■■□□□ 1.3
COL7A1-207ENST00000467985 CPA4Q9UI42 421 aa23.18■■□□□ 1.3
COL7A1-207ENST00000467985 ATAD5Q96QE3 1844 aa23.17■■□□□ 1.3
COL7A1-207ENST00000467985 USP17L5A8MUK1 530 aa23.17■■□□□ 1.3
COL7A1-207ENST00000467985 USP5P45974 858 aa23.17■■□□□ 1.3
COL7A1-207ENST00000467985 ZNF280CQ8ND82 737 aa23.17■■□□□ 1.3
COL7A1-207ENST00000467985 ARMC5Q96C12 935 aa23.17■■□□□ 1.3
COL7A1-207ENST00000467985 AS3MTQ9HBK9 375 aa23.17■■□□□ 1.3
COL7A1-207ENST00000467985 GINM1Q9NU53 330 aa23.17■■□□□ 1.3
COL7A1-207ENST00000467985 PALD1Q9ULE6 856 aa23.17■■□□□ 1.3
COL7A1-207ENST00000467985 ASNSP08243 561 aa23.16■■□□□ 1.3
COL7A1-207ENST00000467985 SLC9C2Q5TAH2 1124 aa23.16■■□□□ 1.3
COL7A1-207ENST00000467985 NBPF11Q86T75 865 aa23.16■■□□□ 1.3
COL7A1-207ENST00000467985 PROCA1Q8NCQ7 364 aaPredicted RBP23.16■■□□□ 1.3
COL7A1-207ENST00000467985 DNAJC2Q99543 621 aaKnown RBP23.16■■□□□ 1.3
COL7A1-207ENST00000467985 LRRCC1Q9C099 1032 aa23.16■■□□□ 1.3
COL7A1-207ENST00000467985 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.16■■□□□ 1.3
COL7A1-207ENST00000467985 AGTPBP1Q9UPW5 1226 aa23.16■■□□□ 1.3
COL7A1-207ENST00000467985 SIPA1L1O43166 1804 aa23.16■■□□□ 1.3
COL7A1-207ENST00000467985 GOLIM4O00461 696 aa23.15■■□□□ 1.3
COL7A1-207ENST00000467985 CYP2C8P10632 490 aa23.15■■□□□ 1.3
COL7A1-207ENST00000467985 ATP5JP18859 108 aa23.15■■□□□ 1.3
COL7A1-207ENST00000467985 SPP2Q13103 211 aa23.15■■□□□ 1.3
COL7A1-207ENST00000467985 ARHGAP39Q9C0H5 1083 aa23.15■■□□□ 1.3
COL7A1-207ENST00000467985 BCL11AQ9H165 835 aa23.15■■□□□ 1.3
COL7A1-207ENST00000467985 SAP30BPQ9UHR5 308 aaKnown RBP23.15■■□□□ 1.3
COL7A1-207ENST00000467985 MAGEB6P1A0A0J9YX57 407 aa23.14■■□□□ 1.29
COL7A1-207ENST00000467985 BCRP11274 1271 aa23.14■■□□□ 1.29
COL7A1-207ENST00000467985 PDE6AP16499 860 aa23.14■■□□□ 1.29
COL7A1-207ENST00000467985 HOXD10P28358 340 aa23.14■■□□□ 1.29
COL7A1-207ENST00000467985 SLC9C1Q4G0N8 1177 aa23.14■■□□□ 1.29
COL7A1-207ENST00000467985 CCDC84Q86UT8 332 aaPredicted RBP23.14■■□□□ 1.29
COL7A1-207ENST00000467985 PNMA3Q9UL41 463 aa23.14■■□□□ 1.29
COL7A1-207ENST00000467985 PTCH2Q9Y6C5 1203 aa23.14■■□□□ 1.29
COL7A1-207ENST00000467985 MYH1P12882 1939 aa23.14■■□□□ 1.29
COL7A1-207ENST00000467985 PDE4DIPQ5VU43 2346 aa23.13■■□□□ 1.29
COL7A1-207ENST00000467985 PSMC4P43686 418 aa23.13■■□□□ 1.29
COL7A1-207ENST00000467985 PABPC4Q13310 644 aaKnown RBP eCLIP23.13■■□□□ 1.29
COL7A1-207ENST00000467985 RRP1BQ14684 758 aaKnown RBP23.13■■□□□ 1.29
COL7A1-207ENST00000467985 TTC6Q86TZ1 520 aa23.13■■□□□ 1.29
COL7A1-207ENST00000467985 SMCR8Q8TEV9 937 aaPredicted RBP23.13■■□□□ 1.29
COL7A1-207ENST00000467985 RIOK1Q9BRS2 568 aaKnown RBP23.13■■□□□ 1.29
COL7A1-207ENST00000467985 WDR18Q9BV38 432 aa23.13■■□□□ 1.29
COL7A1-207ENST00000467985 DNAJC18Q9H819 358 aa23.13■■□□□ 1.29
COL7A1-207ENST00000467985 PAG1Q9NWQ8 432 aa23.13■■□□□ 1.29
COL7A1-207ENST00000467985 BRCA2P51587 3418 aa23.13■■□□□ 1.29
COL7A1-207ENST00000467985 FMNL1O95466 1100 aaPredicted RBP23.12■■□□□ 1.29
COL7A1-207ENST00000467985 TRIM47Q96LD4 638 aa23.12■■□□□ 1.29
COL7A1-207ENST00000467985 CRNKL1Q9BZJ0 848 aaKnown RBP23.12■■□□□ 1.29
COL7A1-207ENST00000467985 EHD4Q9H223 541 aa23.12■■□□□ 1.29
COL7A1-207ENST00000467985 LOC285556D6RIA3 1793 aa23.12■■□□□ 1.29
COL7A1-207ENST00000467985 SH3D19Q5HYK7 790 aa23.11■■□□□ 1.29
COL7A1-207ENST00000467985 HAUS7Q99871 368 aa23.11■■□□□ 1.29
COL7A1-207ENST00000467985 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.11■■□□□ 1.291e-6■■■■■ 38.5
COL7A1-207ENST00000467985 SRRDQ9UH36 339 aa23.11■■□□□ 1.29
COL7A1-207ENST00000467985 SERPINB13Q9UIV8 391 aa23.11■■□□□ 1.29
COL7A1-207ENST00000467985 ZNF532Q9HCE3 1301 aa23.1■■□□□ 1.29
COL7A1-207ENST00000467985 HMGCS2P54868 508 aa23.1■■□□□ 1.29
COL7A1-207ENST00000467985 FCGRTP55899 365 aa23.1■■□□□ 1.29
COL7A1-207ENST00000467985 TREML2Q5T2D2 321 aa23.1■■□□□ 1.29
COL7A1-207ENST00000467985 ZNF333Q96JL9 665 aa23.1■■□□□ 1.29
COL7A1-207ENST00000467985 BOLA2Q9H3K6 86 aa23.1■■□□□ 1.29
COL7A1-207ENST00000467985 DCTPP1Q9H773 170 aa23.1■■□□□ 1.29
COL7A1-207ENST00000467985 ZSWIM8A7E2V4 1837 aa23.1■■□□□ 1.29
COL7A1-207ENST00000467985 RBBP6Q7Z6E9 1792 aaKnown RBP23.09■■□□□ 1.29
COL7A1-207ENST00000467985 TCRBV5S4A2TA0A5A2 114 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms