RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 PHIPQ8WWQ0 1821 aa18.02■□□□□ 0.48
CXCR4-203ENST00000466288 BTDP43251 543 aa18.01■□□□□ 0.47
CXCR4-203ENST00000466288 ZGPATQ8N5A5 531 aaKnown RBP18.01■□□□□ 0.47
CXCR4-203ENST00000466288 ZNF280CQ8ND82 737 aa18.01■□□□□ 0.47
CXCR4-203ENST00000466288 PTPRCP08575 1304 aa18.01■□□□□ 0.47
CXCR4-203ENST00000466288 FAM196BA6NMK8 535 aa18.01■□□□□ 0.47
CXCR4-203ENST00000466288 CIAO1O76071 339 aa18.01■□□□□ 0.47
CXCR4-203ENST00000466288 RHBDL3P58872 404 aa18.01■□□□□ 0.47
CXCR4-203ENST00000466288 DZIP1Q86YF9 867 aaKnown RBP18.01■□□□□ 0.47
CXCR4-203ENST00000466288 SIL1Q9H173 461 aa18.01■□□□□ 0.47
CXCR4-203ENST00000466288 ASCC2Q9H1I8 757 aaPredicted RBP18.01■□□□□ 0.47
CXCR4-203ENST00000466288 MRS2Q9HD23 443 aa18.01■□□□□ 0.47
CXCR4-203ENST00000466288 CEP126Q9P2H0 1117 aa18.01■□□□□ 0.47
CXCR4-203ENST00000466288 FBXO3Q9UK99 471 aa18.01■□□□□ 0.47
CXCR4-203ENST00000466288 DOCK1Q14185 1865 aa18■□□□□ 0.47
CXCR4-203ENST00000466288 MYH13Q9UKX3 1938 aa18■□□□□ 0.47
CXCR4-203ENST00000466288 COL6A1P12109 1028 aa18■□□□□ 0.47
CXCR4-203ENST00000466288 HMGCS2P54868 508 aa18■□□□□ 0.47
CXCR4-203ENST00000466288 PABPC4Q13310 644 aaKnown RBP eCLIP18■□□□□ 0.47
CXCR4-203ENST00000466288 CCDC102BQ68D86 513 aa18■□□□□ 0.47
CXCR4-203ENST00000466288 PHF6Q8IWS0 365 aaKnown RBP eCLIP18■□□□□ 0.47
CXCR4-203ENST00000466288 OSBPL5Q9H0X9 879 aaPredicted RBP18■□□□□ 0.47
CXCR4-203ENST00000466288 MORF4L1Q9UBU8 362 aa18■□□□□ 0.47
CXCR4-203ENST00000466288 DDX60LQ5H9U9 1706 aaKnown RBP17.99■□□□□ 0.47
CXCR4-203ENST00000466288 POTEB2H3BUK9 544 aa17.99■□□□□ 0.47
CXCR4-203ENST00000466288 NPM3O75607 178 aaKnown RBP17.99■□□□□ 0.47
CXCR4-203ENST00000466288 PRKAR2AP13861 404 aaKnown RBP17.99■□□□□ 0.47
CXCR4-203ENST00000466288 CYP2B6P20813 491 aa17.99■□□□□ 0.47
CXCR4-203ENST00000466288 ADORA1P30542 326 aa17.99■□□□□ 0.47
CXCR4-203ENST00000466288 RASGRF1Q13972 1273 aa17.99■□□□□ 0.47
CXCR4-203ENST00000466288 RRP1BQ14684 758 aaKnown RBP17.99■□□□□ 0.47
CXCR4-203ENST00000466288 SLF2Q8IX21 1173 aa17.99■□□□□ 0.47
CXCR4-203ENST00000466288 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.99■□□□□ 0.47
CXCR4-203ENST00000466288 ABCF2Q9UG63 623 aa17.99■□□□□ 0.47
CXCR4-203ENST00000466288 MROH7-TTC4A0A0A0MT08 1334 aa17.98■□□□□ 0.47
CXCR4-203ENST00000466288 GPR75-ASB3A0A0A6YYF3 556 aa17.98■□□□□ 0.47
CXCR4-203ENST00000466288 SH3D19Q5HYK7 790 aa17.98■□□□□ 0.47
CXCR4-203ENST00000466288 ZNF384Q8TF68 577 aa17.98■□□□□ 0.47
CXCR4-203ENST00000466288 TBC1D2Q9BYX2 928 aa17.98■□□□□ 0.47
CXCR4-203ENST00000466288 CDH23Q9H251 3354 aa17.98■□□□□ 0.47
CXCR4-203ENST00000466288 PDS5AQ29RF7 1337 aaKnown RBP17.97■□□□□ 0.47
CXCR4-203ENST00000466288 XRCC5P13010 732 aaKnown RBP17.97■□□□□ 0.47
CXCR4-203ENST00000466288 GUCD1Q96NT3 240 aa17.97■□□□□ 0.47
CXCR4-203ENST00000466288 CAP2P40123 477 aa17.96■□□□□ 0.47
CXCR4-203ENST00000466288 IL15P40933 162 aaPredicted RBP17.96■□□□□ 0.47
CXCR4-203ENST00000466288 MDM2Q00987 491 aaPredicted RBP17.96■□□□□ 0.47
CXCR4-203ENST00000466288 LRRC26Q2I0M4 334 aa17.96■□□□□ 0.47
CXCR4-203ENST00000466288 LHX8Q68G74 356 aa17.96■□□□□ 0.47
CXCR4-203ENST00000466288 FAM109BQ6ICB4 259 aaPredicted RBP17.96■□□□□ 0.47
CXCR4-203ENST00000466288 LOC285556D6RIA3 1793 aa17.96■□□□□ 0.47
CXCR4-203ENST00000466288 MYH2Q9UKX2 1941 aa17.95■□□□□ 0.46
CXCR4-203ENST00000466288 USP17L5A8MUK1 530 aa17.95■□□□□ 0.46
CXCR4-203ENST00000466288 PEX10O60683 326 aa17.95■□□□□ 0.46
CXCR4-203ENST00000466288 MECOMQ03112 1051 aa17.95■□□□□ 0.46
CXCR4-203ENST00000466288 CACNB2Q08289 660 aaPredicted RBP17.95■□□□□ 0.46
CXCR4-203ENST00000466288 SPTY2D1Q68D10 685 aaPredicted RBP17.95■□□□□ 0.46
CXCR4-203ENST00000466288 NUDT12Q9BQG2 462 aa17.95■□□□□ 0.46
CXCR4-203ENST00000466288 TXNRD2Q9NNW7 524 aa17.95■□□□□ 0.46
CXCR4-203ENST00000466288 MUC3AQ02505 3323 aa17.95■□□□□ 0.46
CXCR4-203ENST00000466288 SOCS4Q8WXH5 440 aa17.95■□□□□ 0.46
CXCR4-203ENST00000466288 SSH1Q8WYL5 1049 aa17.95■□□□□ 0.46
CXCR4-203ENST00000466288 USP6NLQ92738 828 aa17.95■□□□□ 0.46
CXCR4-203ENST00000466288 P2RX7Q99572 595 aaKnown RBP17.95■□□□□ 0.46
CXCR4-203ENST00000466288 PA2G4Q9UQ80 394 aaKnown RBP17.95■□□□□ 0.46
CXCR4-203ENST00000466288 PLXNB2O15031 1838 aa17.94■□□□□ 0.46
CXCR4-203ENST00000466288 COL2A1P02458 1487 aaPredicted RBP17.94■□□□□ 0.46
CXCR4-203ENST00000466288 HOXA7P31268 230 aaPredicted RBP17.94■□□□□ 0.46
CXCR4-203ENST00000466288 TIMM10P62072 90 aa17.94■□□□□ 0.46
CXCR4-203ENST00000466288 ZNF521Q96K83 1311 aa17.93■□□□□ 0.46
CXCR4-203ENST00000466288 CCND3P30281 292 aaPredicted RBP17.93■□□□□ 0.46
CXCR4-203ENST00000466288 BACE1P56817 501 aa17.93■□□□□ 0.46
CXCR4-203ENST00000466288 HERVK_113P62684 666 aa17.93■□□□□ 0.46
CXCR4-203ENST00000466288 IRX3P78415 501 aaPredicted RBP17.93■□□□□ 0.46
CXCR4-203ENST00000466288 MTMR2Q13614 643 aa17.93■□□□□ 0.46
CXCR4-203ENST00000466288 ERICH6Q7L0X2 663 aa17.93■□□□□ 0.46
CXCR4-203ENST00000466288 TRMT44Q8IYL2 757 aaKnown RBP17.93■□□□□ 0.46
CXCR4-203ENST00000466288 GPRC5AQ8NFJ5 357 aa17.93■□□□□ 0.46
CXCR4-203ENST00000466288 WDR18Q9BV38 432 aa17.93■□□□□ 0.46
CXCR4-203ENST00000466288 AS3MTQ9HBK9 375 aa17.93■□□□□ 0.46
CXCR4-203ENST00000466288 MAP4K4O95819 1239 aaPredicted RBP17.92■□□□□ 0.46
CXCR4-203ENST00000466288 ZKSCAN1P17029 563 aaPredicted RBP17.92■□□□□ 0.46
CXCR4-203ENST00000466288 FAM161BQ96MY7 647 aa17.92■□□□□ 0.46
CXCR4-203ENST00000466288 COPRSQ9NQ92 184 aa17.92■□□□□ 0.46
CXCR4-203ENST00000466288 RBPJLQ9UBG7 517 aa17.92■□□□□ 0.46
CXCR4-203ENST00000466288 UBTFL1P0CB47 393 aaPredicted RBP17.91■□□□□ 0.46
CXCR4-203ENST00000466288 MAPK4P31152 587 aa17.91■□□□□ 0.46
CXCR4-203ENST00000466288 CCL14Q16627 93 aa17.91■□□□□ 0.46
CXCR4-203ENST00000466288 Q3C1V9 767 aa17.91■□□□□ 0.46
CXCR4-203ENST00000466288 NSUN4Q96CB9 384 aaKnown RBP17.91■□□□□ 0.46
CXCR4-203ENST00000466288 XAGE2Q96GT9 111 aa17.91■□□□□ 0.46
CXCR4-203ENST00000466288 PORCNQ9H237 461 aa17.91■□□□□ 0.46
CXCR4-203ENST00000466288 HERC5Q9UII4 1024 aaKnown RBP17.91■□□□□ 0.46
CXCR4-203ENST00000466288 JAG1P78504 1218 aa17.9■□□□□ 0.46
CXCR4-203ENST00000466288 MORN1Q5T089 497 aa17.9■□□□□ 0.46
CXCR4-203ENST00000466288 POTEEQ6S8J3 1075 aa17.9■□□□□ 0.46
CXCR4-203ENST00000466288 A0A1B0GUL7 405 aa17.89■□□□□ 0.45
CXCR4-203ENST00000466288 RGS2P41220 211 aa17.89■□□□□ 0.45
CXCR4-203ENST00000466288 ERVK-9P63128 1117 aa17.89■□□□□ 0.45
CXCR4-203ENST00000466288 ERVK-24P63145 666 aa17.89■□□□□ 0.45
CXCR4-203ENST00000466288 PDE3AQ14432 1141 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms