RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 NSUN4Q96CB9 384 aaKnown RBP21.54■■□□□ 1.04
COL7A1-205ENST00000465238 ARHGAP39Q9C0H5 1083 aa21.54■■□□□ 1.04
COL7A1-205ENST00000465238 ZSWIM8A7E2V4 1837 aa21.54■■□□□ 1.04
COL7A1-205ENST00000465238 PARK7Q99497 189 aaKnown RBP21.53■■□□□ 1.04
COL7A1-205ENST00000465238 CPA4Q9UI42 421 aa21.53■■□□□ 1.04
COL7A1-205ENST00000465238 ZHX2Q9Y6X8 837 aa21.53■■□□□ 1.04
COL7A1-205ENST00000465238 ADGRA2Q96PE1 1338 aa21.53■■□□□ 1.04
COL7A1-205ENST00000465238 DOCK1Q14185 1865 aa21.52■■□□□ 1.04
COL7A1-205ENST00000465238 CTNND1O60716 968 aaKnown RBP21.52■■□□□ 1.04
COL7A1-205ENST00000465238 PTPRAP18433 802 aa21.52■■□□□ 1.04
COL7A1-205ENST00000465238 TBC1D9Q6ZT07 1266 aa21.52■■□□□ 1.04
COL7A1-205ENST00000465238 FASTKD5Q7L8L6 764 aaKnown RBP21.52■■□□□ 1.04
COL7A1-205ENST00000465238 SMC5Q8IY18 1101 aa21.52■■□□□ 1.04
COL7A1-205ENST00000465238 GPATCH3Q96I76 525 aa21.52■■□□□ 1.04
COL7A1-205ENST00000465238 RAI14Q9P0K7 980 aa21.52■■□□□ 1.04
COL7A1-205ENST00000465238 A0A0G2JLL6 359 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-205ENST00000465238 TBC1D12O60347 775 aa21.51■■□□□ 1.03
COL7A1-205ENST00000465238 ZAP70P43403 619 aa21.51■■□□□ 1.03
COL7A1-205ENST00000465238 B4GALNT3Q6L9W6 998 aa21.51■■□□□ 1.03
COL7A1-205ENST00000465238 GPAT2Q6NUI2 795 aa21.51■■□□□ 1.03
COL7A1-205ENST00000465238 PRRT2Q7Z6L0 340 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-205ENST00000465238 LRP2BPQ9P2M1 347 aa21.51■■□□□ 1.03
COL7A1-205ENST00000465238 AFG3L2Q9Y4W6 797 aa21.51■■□□□ 1.03
COL7A1-205ENST00000465238 COL2A1P02458 1487 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-205ENST00000465238 EN2P19622 333 aaPredicted RBP21.5■■□□□ 1.03
COL7A1-205ENST00000465238 HOXD10P28358 340 aa21.5■■□□□ 1.03
COL7A1-205ENST00000465238 PSMC4P43686 418 aa21.5■■□□□ 1.03
COL7A1-205ENST00000465238 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.5■■□□□ 1.03
COL7A1-205ENST00000465238 ECHDC1Q9NTX5 307 aa21.5■■□□□ 1.03
COL7A1-205ENST00000465238 PTPRFP10586 1907 aa21.5■■□□□ 1.03
COL7A1-205ENST00000465238 CYP2E1P05181 493 aaPredicted RBP21.49■■□□□ 1.03
COL7A1-205ENST00000465238 ATP5JP18859 108 aa21.49■■□□□ 1.03
COL7A1-205ENST00000465238 TRIM47Q96LD4 638 aa21.49■■□□□ 1.03
COL7A1-205ENST00000465238 SRRDQ9UH36 339 aa21.49■■□□□ 1.03
COL7A1-205ENST00000465238 PHIPQ8WWQ0 1821 aa21.49■■□□□ 1.03
COL7A1-205ENST00000465238 SLURP2P0DP57 97 aa21.48■■□□□ 1.03
COL7A1-205ENST00000465238 CTGFP29279 349 aa21.48■■□□□ 1.03
COL7A1-205ENST00000465238 SLC4A8Q2Y0W8 1093 aa21.48■■□□□ 1.03
COL7A1-205ENST00000465238 SH3TC2Q8TF17 1288 aa21.48■■□□□ 1.03
COL7A1-205ENST00000465238 NOL10Q9BSC4 688 aaKnown RBP21.48■■□□□ 1.03
COL7A1-205ENST00000465238 BOLA2Q9H3K6 86 aa21.48■■□□□ 1.03
COL7A1-205ENST00000465238 SLC45A1Q9Y2W3 748 aa21.48■■□□□ 1.03
COL7A1-205ENST00000465238 FMNL1O95466 1100 aaPredicted RBP21.47■■□□□ 1.03
COL7A1-205ENST00000465238 CYP2C8P10632 490 aa21.47■■□□□ 1.03
COL7A1-205ENST00000465238 BCRP11274 1271 aa21.47■■□□□ 1.03
COL7A1-205ENST00000465238 GADL1Q6ZQY3 521 aa21.47■■□□□ 1.03
COL7A1-205ENST00000465238 DNAJC2Q99543 621 aaKnown RBP21.47■■□□□ 1.03
COL7A1-205ENST00000465238 OSBPL5Q9H0X9 879 aaPredicted RBP21.47■■□□□ 1.03
COL7A1-205ENST00000465238 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.47■■□□□ 1.03
COL7A1-205ENST00000465238 NDUFB9Q9Y6M9 179 aa21.47■■□□□ 1.03
COL7A1-205ENST00000465238 MAST2Q6P0Q8 1798 aa21.46■■□□□ 1.03
COL7A1-205ENST00000465238 IGSF3O75054 1194 aa21.46■■□□□ 1.03
COL7A1-205ENST00000465238 ECM2O94769 699 aaPredicted RBP21.46■■□□□ 1.03
COL7A1-205ENST00000465238 OSBPP22059 807 aa21.46■■□□□ 1.03
COL7A1-205ENST00000465238 TTF1Q15361 905 aaPredicted RBP21.46■■□□□ 1.03
COL7A1-205ENST00000465238 TEX11Q8IYF3 940 aa21.46■■□□□ 1.03
COL7A1-205ENST00000465238 LNPKQ9C0E8 428 aa21.46■■□□□ 1.03
COL7A1-205ENST00000465238 MGAMO43451 1857 aa21.45■■□□□ 1.02
COL7A1-205ENST00000465238 MYO5AQ9Y4I1 1855 aaKnown RBP21.45■■□□□ 1.02
COL7A1-205ENST00000465238 TRIM75PA6NK02 468 aa21.45■■□□□ 1.02
COL7A1-205ENST00000465238 BAG3O95817 575 aa21.45■■□□□ 1.02
COL7A1-205ENST00000465238 NUCB1Q02818 461 aa21.45■■□□□ 1.02
COL7A1-205ENST00000465238 NAA16Q6N069 864 aaPredicted RBP21.45■■□□□ 1.02
COL7A1-205ENST00000465238 CHD1LQ86WJ1 897 aa21.45■■□□□ 1.02
COL7A1-205ENST00000465238 RAET1EQ8TD07 263 aa21.45■■□□□ 1.02
COL7A1-205ENST00000465238 PIH1D3Q9NQM4 214 aaKnown RBP21.45■■□□□ 1.02
COL7A1-205ENST00000465238 TTC41PQ6P2S7 1318 aa21.45■■□□□ 1.02
COL7A1-205ENST00000465238 FAM196BA6NMK8 535 aa21.44■■□□□ 1.02
COL7A1-205ENST00000465238 GOLIM4O00461 696 aa21.44■■□□□ 1.02
COL7A1-205ENST00000465238 ERC2O15083 957 aa21.44■■□□□ 1.02
COL7A1-205ENST00000465238 IDH1O75874 414 aaKnown RBP21.44■■□□□ 1.02
COL7A1-205ENST00000465238 MYCP01106 439 aaPredicted RBP21.44■■□□□ 1.02
COL7A1-205ENST00000465238 PLCG2P16885 1265 aa21.44■■□□□ 1.02
COL7A1-205ENST00000465238 MX1P20591 662 aa21.44■■□□□ 1.02
COL7A1-205ENST00000465238 FCGRTP55899 365 aa21.44■■□□□ 1.02
COL7A1-205ENST00000465238 OTUD7AQ8TE49 926 aaPredicted RBP21.44■■□□□ 1.02
COL7A1-205ENST00000465238 HAUS7Q99871 368 aa21.44■■□□□ 1.02
COL7A1-205ENST00000465238 TBC1D2Q9BYX2 928 aa21.44■■□□□ 1.02
COL7A1-205ENST00000465238 ANTXR1Q9H6X2 564 aa21.44■■□□□ 1.02
COL7A1-205ENST00000465238 HERC5Q9UII4 1024 aaKnown RBP21.44■■□□□ 1.02
COL7A1-205ENST00000465238 MYPNQ86TC9 1320 aa21.44■■□□□ 1.02
COL7A1-205ENST00000465238 ATAD5Q96QE3 1844 aa21.43■■□□□ 1.02
COL7A1-205ENST00000465238 GRK4P32298 578 aa21.43■■□□□ 1.02
COL7A1-205ENST00000465238 PPP4CP60510 307 aa21.43■■□□□ 1.02
COL7A1-205ENST00000465238 MAP3K12Q12852 859 aa21.43■■□□□ 1.02
COL7A1-205ENST00000465238 SH3RF3Q8TEJ3 882 aaPredicted RBP21.43■■□□□ 1.02
COL7A1-205ENST00000465238 DHX36Q9H2U1 1008 aaKnown RBP21.43■■□□□ 1.02
COL7A1-205ENST00000465238 PAG1Q9NWQ8 432 aa21.43■■□□□ 1.02
COL7A1-205ENST00000465238 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.43■■□□□ 1.02
COL7A1-205ENST00000465238 AGTPBP1Q9UPW5 1226 aa21.43■■□□□ 1.02
COL7A1-205ENST00000465238 TSHZ3Q63HK5 1081 aa21.42■■□□□ 1.02
COL7A1-205ENST00000465238 CCDC84Q86UT8 332 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-205ENST00000465238 SMCR8Q8TEV9 937 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-205ENST00000465238 AATFQ9NY61 560 aaKnown RBP eCLIP21.42■■□□□ 1.02
COL7A1-205ENST00000465238 PI4KBQ9UBF8 816 aa21.42■■□□□ 1.02
COL7A1-205ENST00000465238 CAP2P40123 477 aa21.41■■□□□ 1.02
COL7A1-205ENST00000465238 PROCA1Q8NCQ7 364 aaPredicted RBP21.41■■□□□ 1.02
COL7A1-205ENST00000465238 ZNF280CQ8ND82 737 aa21.41■■□□□ 1.02
COL7A1-205ENST00000465238 PNMA3Q9UL41 463 aa21.41■■□□□ 1.02
COL7A1-205ENST00000465238 CDK5RAP2Q96SN8 1893 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms