RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 CSADQ9Y600 493 aa14.08□□□□□ -0.16
USP54-209ENST00000464635 HTTP42858 3142 aa14.08□□□□□ -0.16
USP54-209ENST00000464635 CDK5RAP2Q96SN8 1893 aa14.08□□□□□ -0.16
USP54-209ENST00000464635 SPDYE5A6NIY4 337 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 RNF113AO15541 343 aaKnown RBP14.07□□□□□ -0.16
USP54-209ENST00000464635 ST18O60284 1047 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 MAP4K4O95819 1239 aaPredicted RBP14.07□□□□□ -0.16
USP54-209ENST00000464635 INPP5BP32019 993 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 CAP1Q01518 475 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 NECTIN1Q15223 517 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 ZMYM1Q5SVZ6 1142 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 HSCBQ8IWL3 235 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 ZFPM1Q8IX07 1006 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 FAM151AQ8WW52 585 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.07□□□□□ -0.16
USP54-209ENST00000464635 USP40Q9NVE5 1235 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 HMG20BQ9P0W2 317 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 DOCK1Q14185 1865 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 GAKO14976 1311 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 CCDC171Q6TFL3 1326 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 MYH7P12883 1935 aa14.07□□□□□ -0.16
USP54-209ENST00000464635 PHIPQ8WWQ0 1821 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 PTPRFP10586 1907 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 CCL15-CCL14A0A0B4J2E2 113 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 MLLT1Q03111 559 aaPredicted RBP14.06□□□□□ -0.16
USP54-209ENST00000464635 NMIQ13287 307 aaPredicted RBP14.06□□□□□ -0.16
USP54-209ENST00000464635 UBE3CQ15386 1083 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 CCL15Q16663 113 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 RNF20Q5VTR2 975 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 FAM43AQ8N2R8 423 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 ZNF384Q8TF68 577 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 DSCC1Q9BVC3 393 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 ABCF2Q9UG63 623 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 ATRNL1Q5VV63 1379 aa14.06□□□□□ -0.16
USP54-209ENST00000464635 GOLIM4O00461 696 aa14.05□□□□□ -0.16
USP54-209ENST00000464635 SLURP2P0DP57 97 aa14.05□□□□□ -0.16
USP54-209ENST00000464635 DCAF15Q66K64 600 aa14.05□□□□□ -0.16
USP54-209ENST00000464635 FBXO46Q6PJ61 603 aaPredicted RBP14.05□□□□□ -0.16
USP54-209ENST00000464635 DZIP1Q86YF9 867 aaKnown RBP14.05□□□□□ -0.16
USP54-209ENST00000464635 ZGPATQ8N5A5 531 aaKnown RBP14.05□□□□□ -0.16
USP54-209ENST00000464635 CD99L2Q8TCZ2 262 aa14.05□□□□□ -0.16
USP54-209ENST00000464635 DNAJC2Q99543 621 aaKnown RBP14.05□□□□□ -0.16
USP54-209ENST00000464635 ZNF341Q9BYN7 854 aa14.05□□□□□ -0.16
USP54-209ENST00000464635 ATAD5Q96QE3 1844 aa14.05□□□□□ -0.16
USP54-209ENST00000464635 SIPA1L1O43166 1804 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 FOCADQ5VW36 1801 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 ZKSCAN1P17029 563 aaPredicted RBP14.04□□□□□ -0.16
USP54-209ENST00000464635 MCAMP43121 646 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 GTF2A2P52657 109 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 KRT32Q14532 448 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 PKN2Q16513 984 aaKnown RBP14.04□□□□□ -0.16
USP54-209ENST00000464635 OTOP1Q7RTM1 612 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 ERO1BQ86YB8 467 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 HOOK2Q96ED9 719 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 IL25Q9H293 177 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 ALDH8A1Q9H2A2 487 aaPredicted RBP14.04□□□□□ -0.16
USP54-209ENST00000464635 TRIM17Q9Y577 477 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 U3KPZ7 1027 aaPredicted RBP14.04□□□□□ -0.16
USP54-209ENST00000464635 MROH7-TTC4A0A0A0MT08 1334 aa14.04□□□□□ -0.16
USP54-209ENST00000464635 RBBP6Q7Z6E9 1792 aaKnown RBP14.04□□□□□ -0.16
USP54-209ENST00000464635 A0A0D9SFI3 127 aa14.03□□□□□ -0.16
USP54-209ENST00000464635 K7ELQ4 463 aaPredicted RBP14.03□□□□□ -0.16
USP54-209ENST00000464635 IRF6O14896 467 aa14.03□□□□□ -0.16
USP54-209ENST00000464635 WDHD1O75717 1129 aaPredicted RBP14.03□□□□□ -0.16
USP54-209ENST00000464635 BTDP43251 543 aa14.03□□□□□ -0.16
USP54-209ENST00000464635 MECOMQ03112 1051 aa14.03□□□□□ -0.16
USP54-209ENST00000464635 TAF1CQ15572 869 aaPredicted RBP14.03□□□□□ -0.16
USP54-209ENST00000464635 OTUD7BQ6GQQ9 843 aa14.03□□□□□ -0.16
USP54-209ENST00000464635 SH3BP5LQ7L8J4 393 aa14.03□□□□□ -0.16
USP54-209ENST00000464635 SPATA5Q8NB90 893 aa14.03□□□□□ -0.16
USP54-209ENST00000464635 APPBP2Q92624 585 aa14.03□□□□□ -0.16
USP54-209ENST00000464635 FAM227BQ96M60 508 aa14.03□□□□□ -0.16
USP54-209ENST00000464635 DDX4Q9NQI0 724 aaKnown RBP14.03□□□□□ -0.16
USP54-209ENST00000464635 ZNF112Q9UJU3 913 aa14.03□□□□□ -0.16
USP54-209ENST00000464635 PSMA5P28066 241 aa14.02□□□□□ -0.17
USP54-209ENST00000464635 ZAP70P43403 619 aa14.02□□□□□ -0.17
USP54-209ENST00000464635 PPIL2Q13356 520 aa14.02□□□□□ -0.17
USP54-209ENST00000464635 ERICH6Q7L0X2 663 aa14.02□□□□□ -0.17
USP54-209ENST00000464635 IDI2Q9BXS1 227 aa14.02□□□□□ -0.17
USP54-209ENST00000464635 DDTLA6NHG4 134 aaPredicted RBP14.01□□□□□ -0.17
USP54-209ENST00000464635 BTBD19C9JJ37 291 aa14.01□□□□□ -0.17
USP54-209ENST00000464635 CYP2E1P05181 493 aaPredicted RBP14.01□□□□□ -0.17
USP54-209ENST00000464635 ADD2P35612 726 aa14.01□□□□□ -0.17
USP54-209ENST00000464635 RHBDL3P58872 404 aa14.01□□□□□ -0.17
USP54-209ENST00000464635 SP3Q02447 781 aa14.01□□□□□ -0.17
USP54-209ENST00000464635 MAP3K12Q12852 859 aa14.01□□□□□ -0.17
USP54-209ENST00000464635 SNAPC2Q13487 334 aa14.01□□□□□ -0.17
USP54-209ENST00000464635 PICALMQ13492 652 aa14.01□□□□□ -0.17
USP54-209ENST00000464635 SPTY2D1Q68D10 685 aaPredicted RBP14.01□□□□□ -0.17
USP54-209ENST00000464635 EDC3Q96F86 508 aaKnown RBP14.01□□□□□ -0.17
USP54-209ENST00000464635 FAM163AQ96GL9 167 aaPredicted RBP14.01□□□□□ -0.17
USP54-209ENST00000464635 ERO1AQ96HE7 468 aa14.01□□□□□ -0.17
USP54-209ENST00000464635 CTNNA3Q9UI47 895 aa14.01□□□□□ -0.17
USP54-209ENST00000464635 CIZ1Q9ULV3 898 aaPredicted RBP14.01□□□□□ -0.17
USP54-209ENST00000464635 SNX14Q9Y5W7 946 aa14.01□□□□□ -0.17
USP54-209ENST00000464635 MGAMO43451 1857 aa14□□□□□ -0.17
USP54-209ENST00000464635 ZMYM6O95789 1325 aa14□□□□□ -0.17
USP54-209ENST00000464635 ENTPD3O75355 529 aa14□□□□□ -0.17
USP54-209ENST00000464635 CETPP11597 493 aa14□□□□□ -0.17
USP54-209ENST00000464635 PTH1RQ03431 593 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms