RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 COL13A1Q5TAT6 717 aaPredicted RBP20.55■□□□□ 0.88
VPS52-215ENST00000464425 STAP2Q9UGK3 403 aa20.55■□□□□ 0.88
VPS52-215ENST00000464425 COL2A1P02458 1487 aaPredicted RBP20.55■□□□□ 0.88
VPS52-215ENST00000464425 IRF6O14896 467 aa20.54■□□□□ 0.88
VPS52-215ENST00000464425 INHBEP58166 350 aa20.54■□□□□ 0.88
VPS52-215ENST00000464425 NOL9Q5SY16 702 aaKnown RBP20.54■□□□□ 0.88
VPS52-215ENST00000464425 SCYL3Q8IZE3 742 aa20.54■□□□□ 0.88
VPS52-215ENST00000464425 SDR42E1Q8WUS8 393 aa20.54■□□□□ 0.88
VPS52-215ENST00000464425 MS4A4AQ96JQ5 239 aa20.54■□□□□ 0.88
VPS52-215ENST00000464425 PUS7LQ9H0K6 701 aaKnown RBP20.54■□□□□ 0.88
VPS52-215ENST00000464425 PICK1Q9NRD5 415 aa20.54■□□□□ 0.88
VPS52-215ENST00000464425 SAGE1Q9NXZ1 904 aa20.54■□□□□ 0.88
VPS52-215ENST00000464425 RNF113AO15541 343 aaKnown RBP20.53■□□□□ 0.88
VPS52-215ENST00000464425 PRKAB2O43741 272 aa20.53■□□□□ 0.88
VPS52-215ENST00000464425 CTNND1O60716 968 aaKnown RBP20.53■□□□□ 0.88
VPS52-215ENST00000464425 HLA-DOAP06340 250 aa20.53■□□□□ 0.88
VPS52-215ENST00000464425 GTF2A2P52657 109 aa20.53■□□□□ 0.88
VPS52-215ENST00000464425 PPATQ06203 517 aa20.53■□□□□ 0.88
VPS52-215ENST00000464425 PPIL2Q13356 520 aa20.53■□□□□ 0.88
VPS52-215ENST00000464425 IFNL1Q8IU54 200 aa20.53■□□□□ 0.88
VPS52-215ENST00000464425 FOXP4Q8IVH2 680 aaPredicted RBP20.53■□□□□ 0.88
VPS52-215ENST00000464425 CRACR2BQ8N4Y2 399 aaPredicted RBP20.53■□□□□ 0.88
VPS52-215ENST00000464425 TRIM34Q9BYJ4 488 aa20.53■□□□□ 0.88
VPS52-215ENST00000464425 PRDM10Q9NQV6 1147 aa20.53■□□□□ 0.88
VPS52-215ENST00000464425 HERC5Q9UII4 1024 aaKnown RBP20.53■□□□□ 0.88
VPS52-215ENST00000464425 CDK5RAP2Q96SN8 1893 aa20.52■□□□□ 0.88
VPS52-215ENST00000464425 CCL15-CCL14A0A0B4J2E2 113 aa20.52■□□□□ 0.88
VPS52-215ENST00000464425 IGF2BP3O00425 579 aaKnown RBP eCLIP20.52■□□□□ 0.88
VPS52-215ENST00000464425 TBC1D8O95759 1140 aa20.52■□□□□ 0.88
VPS52-215ENST00000464425 POLR3DP05423 398 aaPredicted RBP20.52■□□□□ 0.88
VPS52-215ENST00000464425 RRP1BQ14684 758 aaKnown RBP20.52■□□□□ 0.88
VPS52-215ENST00000464425 CCL15Q16663 113 aa20.52■□□□□ 0.88
VPS52-215ENST00000464425 PTPN18Q99952 460 aa20.52■□□□□ 0.88
VPS52-215ENST00000464425 FSD1Q9BTV5 496 aa20.52■□□□□ 0.88
VPS52-215ENST00000464425 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.52■□□□□ 0.88
VPS52-215ENST00000464425 TESPA1A2RU30 521 aaPredicted RBP20.51■□□□□ 0.87
VPS52-215ENST00000464425 PTPRAP18433 802 aa20.51■□□□□ 0.87
VPS52-215ENST00000464425 SNAPC2Q13487 334 aa20.51■□□□□ 0.87
VPS52-215ENST00000464425 BRI3BPQ8WY22 251 aa20.51■□□□□ 0.87
VPS52-215ENST00000464425 DNAJC18Q9H819 358 aa20.51■□□□□ 0.87
VPS52-215ENST00000464425 DCP1AQ9NPI6 582 aaPredicted RBP20.51■□□□□ 0.87
VPS52-215ENST00000464425 MCM9Q9NXL9 1143 aa20.51■□□□□ 0.87
VPS52-215ENST00000464425 ZHX2Q9Y6X8 837 aa20.51■□□□□ 0.87
VPS52-215ENST00000464425 ZFYP08048 801 aaPredicted RBP20.5■□□□□ 0.87
VPS52-215ENST00000464425 PLCD1P51178 756 aa20.5■□□□□ 0.87
VPS52-215ENST00000464425 TTC6Q86TZ1 520 aa20.5■□□□□ 0.87
VPS52-215ENST00000464425 CCDC84Q86UT8 332 aaPredicted RBP20.5■□□□□ 0.87
VPS52-215ENST00000464425 METTL16Q86W50 562 aaKnown RBP20.5■□□□□ 0.87
VPS52-215ENST00000464425 PLEKHM2Q8IWE5 1019 aa20.5■□□□□ 0.87
VPS52-215ENST00000464425 APPBP2Q92624 585 aa20.5■□□□□ 0.87
VPS52-215ENST00000464425 OSBP2Q969R2 916 aa20.5■□□□□ 0.87
VPS52-215ENST00000464425 SLC4A4Q9Y6R1 1079 aa20.5■□□□□ 0.87
VPS52-215ENST00000464425 FOCADQ5VW36 1801 aa20.5■□□□□ 0.87
VPS52-215ENST00000464425 CETPP11597 493 aa20.49■□□□□ 0.87
VPS52-215ENST00000464425 CAP2P40123 477 aa20.49■□□□□ 0.87
VPS52-215ENST00000464425 LRRFIP1Q32MZ4 808 aaKnown RBP20.49■□□□□ 0.87
VPS52-215ENST00000464425 OTUD7BQ6GQQ9 843 aa20.49■□□□□ 0.87
VPS52-215ENST00000464425 R3HDMLQ9H3Y0 253 aa20.49■□□□□ 0.87
VPS52-215ENST00000464425 ALDH1A1P00352 501 aa20.48■□□□□ 0.87
VPS52-215ENST00000464425 CYP2D6P10635 497 aa20.48■□□□□ 0.87
VPS52-215ENST00000464425 EVX2Q03828 476 aa20.48■□□□□ 0.87
VPS52-215ENST00000464425 EVI5LQ96CN4 794 aa20.48■□□□□ 0.87
VPS52-215ENST00000464425 STRBPQ96SI9 672 aaKnown RBP20.48■□□□□ 0.87
VPS52-215ENST00000464425 SERPINB13Q9UIV8 391 aa20.48■□□□□ 0.87
VPS52-215ENST00000464425 MYH7P12883 1935 aa20.48■□□□□ 0.87
VPS52-215ENST00000464425 MYH1P12882 1939 aa20.47■□□□□ 0.87
VPS52-215ENST00000464425 M0R2C6 588 aa20.47■□□□□ 0.87
VPS52-215ENST00000464425 GDF11O95390 407 aa20.47■□□□□ 0.87
VPS52-215ENST00000464425 FAM43AQ8N2R8 423 aa20.47■□□□□ 0.87
VPS52-215ENST00000464425 SEC62Q99442 399 aaKnown RBP20.47■□□□□ 0.87
VPS52-215ENST00000464425 ATP8A2Q9NTI2 1148 aa20.47■□□□□ 0.87
VPS52-215ENST00000464425 KCNH4Q9UQ05 1017 aa20.47■□□□□ 0.87
VPS52-215ENST00000464425 AFG3L2Q9Y4W6 797 aa20.47■□□□□ 0.87
VPS52-215ENST00000464425 SIPA1L1O43166 1804 aa20.46■□□□□ 0.87
VPS52-215ENST00000464425 TRIM75PA6NK02 468 aa20.46■□□□□ 0.87
VPS52-215ENST00000464425 TRIM6-TRIM34B2RNG4 842 aa20.46■□□□□ 0.87
VPS52-215ENST00000464425 JAG1P78504 1218 aa20.46■□□□□ 0.87
VPS52-215ENST00000464425 SHROOM1Q2M3G4 852 aaPredicted RBP20.46■□□□□ 0.87
VPS52-215ENST00000464425 EHD4Q9H223 541 aa20.46■□□□□ 0.87
VPS52-215ENST00000464425 OSBPL3Q9H4L5 887 aa20.46■□□□□ 0.87
VPS52-215ENST00000464425 CYP2D7A0A087X1C5 515 aa20.45■□□□□ 0.86
VPS52-215ENST00000464425 BTBD19C9JJ37 291 aa20.45■□□□□ 0.86
VPS52-215ENST00000464425 CXCL11O14625 94 aa20.45■□□□□ 0.86
VPS52-215ENST00000464425 GPAA1O43292 621 aa20.45■□□□□ 0.86
VPS52-215ENST00000464425 RILPL2Q969X0 211 aa20.45■□□□□ 0.86
VPS52-215ENST00000464425 DDRGK1Q96HY6 314 aa20.45■□□□□ 0.86
VPS52-215ENST00000464425 CASP8AP2Q9UKL3 1982 aa20.45■□□□□ 0.86
VPS52-215ENST00000464425 USP17L12C9JPN9 530 aa20.44■□□□□ 0.86
VPS52-215ENST00000464425 USP17L21D6R901 530 aa20.44■□□□□ 0.86
VPS52-215ENST00000464425 SMIM22K7EJ46 135 aa20.44■□□□□ 0.86
VPS52-215ENST00000464425 PDE4AP27815 886 aa20.44■□□□□ 0.86
VPS52-215ENST00000464425 CRHR2Q13324 411 aa20.44■□□□□ 0.86
VPS52-215ENST00000464425 ZMYM1Q5SVZ6 1142 aa20.44■□□□□ 0.86
VPS52-215ENST00000464425 USP17L5A8MUK1 530 aa20.43■□□□□ 0.86
VPS52-215ENST00000464425 GSG1L2A8MUP6 293 aa20.43■□□□□ 0.86
VPS52-215ENST00000464425 GPR25O00155 361 aa20.43■□□□□ 0.86
VPS52-215ENST00000464425 APPP05067 770 aa20.43■□□□□ 0.86
VPS52-215ENST00000464425 ASNSP08243 561 aa20.43■□□□□ 0.86
VPS52-215ENST00000464425 SHMT1P34896 483 aa20.43■□□□□ 0.86
VPS52-215ENST00000464425 SPP2Q13103 211 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms