RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 DHX36Q9H2U1 1008 aaKnown RBP18.67■□□□□ 0.58
VARS-219ENST00000461328 PI4KBQ9UBF8 816 aa18.67■□□□□ 0.58
VARS-219ENST00000461328 ZBTB47Q9UFB7 747 aaPredicted RBP18.67■□□□□ 0.58
VARS-219ENST00000461328 FLT1P17948 1338 aa18.67■□□□□ 0.58
VARS-219ENST00000461328 DOCK1Q14185 1865 aa18.67■□□□□ 0.58
VARS-219ENST00000461328 PDHXO00330 501 aa18.66■□□□□ 0.58
VARS-219ENST00000461328 TLR2O60603 784 aa18.66■□□□□ 0.58
VARS-219ENST00000461328 ATP5JP18859 108 aa18.66■□□□□ 0.58
VARS-219ENST00000461328 TMED8Q6PL24 325 aaPredicted RBP18.66■□□□□ 0.58
VARS-219ENST00000461328 CERS3Q8IU89 383 aa18.66■□□□□ 0.58
VARS-219ENST00000461328 EFCC1Q9HA90 598 aa18.66■□□□□ 0.58
VARS-219ENST00000461328 HERC5Q9UII4 1024 aaKnown RBP18.66■□□□□ 0.58
VARS-219ENST00000461328 SOX10P56693 466 aa18.65■□□□□ 0.58
VARS-219ENST00000461328 ARHGEF6Q15052 776 aa18.65■□□□□ 0.58
VARS-219ENST00000461328 EDC3Q96F86 508 aaKnown RBP18.65■□□□□ 0.58
VARS-219ENST00000461328 TRIM34Q9BYJ4 488 aa18.65■□□□□ 0.58
VARS-219ENST00000461328 PAG1Q9NWQ8 432 aa18.65■□□□□ 0.58
VARS-219ENST00000461328 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.65■□□□□ 0.58
VARS-219ENST00000461328 AFG3L2Q9Y4W6 797 aa18.65■□□□□ 0.58
VARS-219ENST00000461328 A0A0G2JLL6 359 aaPredicted RBP18.64■□□□□ 0.57
VARS-219ENST00000461328 PDE6AP16499 860 aa18.64■□□□□ 0.57
VARS-219ENST00000461328 USP5P45974 858 aa18.64■□□□□ 0.57
VARS-219ENST00000461328 MOGSQ13724 837 aa18.64■□□□□ 0.57
VARS-219ENST00000461328 SLC9C2Q5TAH2 1124 aa18.64■□□□□ 0.57
VARS-219ENST00000461328 GADL1Q6ZQY3 521 aa18.64■□□□□ 0.57
VARS-219ENST00000461328 FASTKD5Q7L8L6 764 aaKnown RBP18.64■□□□□ 0.57
VARS-219ENST00000461328 PRRT2Q7Z6L0 340 aaPredicted RBP18.64■□□□□ 0.57
VARS-219ENST00000461328 CCDC84Q86UT8 332 aaPredicted RBP18.64■□□□□ 0.57
VARS-219ENST00000461328 CRACR2BQ8N4Y2 399 aaPredicted RBP18.64■□□□□ 0.57
VARS-219ENST00000461328 ECHDC1Q9NTX5 307 aa18.64■□□□□ 0.57
VARS-219ENST00000461328 SAP30BPQ9UHR5 308 aaKnown RBP18.64■□□□□ 0.57
VARS-219ENST00000461328 PALD1Q9ULE6 856 aa18.64■□□□□ 0.57
VARS-219ENST00000461328 TRIM75PA6NK02 468 aa18.63■□□□□ 0.57
VARS-219ENST00000461328 HLA-DOAP06340 250 aa18.63■□□□□ 0.57
VARS-219ENST00000461328 CAP2P40123 477 aa18.63■□□□□ 0.57
VARS-219ENST00000461328 RGS19P49795 217 aa18.63■□□□□ 0.57
VARS-219ENST00000461328 MLLT1Q03111 559 aaPredicted RBP18.63■□□□□ 0.57
VARS-219ENST00000461328 KIF22Q14807 665 aa18.63■□□□□ 0.57
VARS-219ENST00000461328 PARK7Q99497 189 aaKnown RBP18.63■□□□□ 0.57
VARS-219ENST00000461328 HAUS7Q99871 368 aa18.63■□□□□ 0.57
VARS-219ENST00000461328 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.63■□□□□ 0.577e-7■■■■□ 20.2
VARS-219ENST00000461328 SUPT16HQ9Y5B9 1047 aaKnown RBP18.63■□□□□ 0.57
VARS-219ENST00000461328 MAGEB6P1A0A0J9YX57 407 aa18.62■□□□□ 0.57
VARS-219ENST00000461328 SLC4A8Q2Y0W8 1093 aa18.62■□□□□ 0.57
VARS-219ENST00000461328 GPAT2Q6NUI2 795 aa18.62■□□□□ 0.57
VARS-219ENST00000461328 FOXP4Q8IVH2 680 aaPredicted RBP18.62■□□□□ 0.57
VARS-219ENST00000461328 CPA4Q9UI42 421 aa18.62■□□□□ 0.57
VARS-219ENST00000461328 PTPN22Q9Y2R2 807 aa18.62■□□□□ 0.57
VARS-219ENST00000461328 FOCADQ5VW36 1801 aa18.62■□□□□ 0.57
VARS-219ENST00000461328 CDK5RAP2Q96SN8 1893 aa18.62■□□□□ 0.57
VARS-219ENST00000461328 ZNF532Q9HCE3 1301 aa18.61■□□□□ 0.57
VARS-219ENST00000461328 CAP1Q01518 475 aa18.61■□□□□ 0.57
VARS-219ENST00000461328 AAMPQ13685 434 aa18.61■□□□□ 0.57
VARS-219ENST00000461328 RRP1BQ14684 758 aaKnown RBP18.61■□□□□ 0.57
VARS-219ENST00000461328 TSHZ3Q63HK5 1081 aa18.61■□□□□ 0.57
VARS-219ENST00000461328 C17orf99Q6UX52 265 aa18.61■□□□□ 0.57
VARS-219ENST00000461328 LACTBP83111 547 aaPredicted RBP18.6■□□□□ 0.57
VARS-219ENST00000461328 TBC1D2Q9BYX2 928 aa18.6■□□□□ 0.57
VARS-219ENST00000461328 SIPA1L1O43166 1804 aa18.6■□□□□ 0.57
VARS-219ENST00000461328 ADGRA2Q96PE1 1338 aa18.59■□□□□ 0.57
VARS-219ENST00000461328 PHIPQ8WWQ0 1821 aa18.59■□□□□ 0.57
VARS-219ENST00000461328 USP17L5A8MUK1 530 aa18.59■□□□□ 0.57
VARS-219ENST00000461328 ECM2O94769 699 aaPredicted RBP18.59■□□□□ 0.57
VARS-219ENST00000461328 CYP2C8P10632 490 aa18.59■□□□□ 0.57
VARS-219ENST00000461328 SPP2Q13103 211 aa18.59■□□□□ 0.57
VARS-219ENST00000461328 HDAC1Q13547 482 aaPredicted RBP18.59■□□□□ 0.57
VARS-219ENST00000461328 METTL16Q86W50 562 aaKnown RBP18.59■□□□□ 0.57
VARS-219ENST00000461328 ZNF280CQ8ND82 737 aa18.59■□□□□ 0.57
VARS-219ENST00000461328 EXOC6Q8TAG9 804 aa18.59■□□□□ 0.57
VARS-219ENST00000461328 RIOK1Q9BRS2 568 aaKnown RBP18.59■□□□□ 0.57
VARS-219ENST00000461328 ARHGAP39Q9C0H5 1083 aa18.59■□□□□ 0.57
VARS-219ENST00000461328 DNAJC18Q9H819 358 aa18.59■□□□□ 0.57
VARS-219ENST00000461328 AS3MTQ9HBK9 375 aa18.59■□□□□ 0.57
VARS-219ENST00000461328 ATAD5Q96QE3 1844 aa18.58■□□□□ 0.57
VARS-219ENST00000461328 ASNSP08243 561 aa18.58■□□□□ 0.56
VARS-219ENST00000461328 ANKRD45Q5TZF3 282 aa18.58■□□□□ 0.56
VARS-219ENST00000461328 ZSCAN25Q6NSZ9 544 aa18.58■□□□□ 0.56
VARS-219ENST00000461328 GCC1Q96CN9 775 aa18.58■□□□□ 0.56
VARS-219ENST00000461328 CRNKL1Q9BZJ0 848 aaKnown RBP18.58■□□□□ 0.56
VARS-219ENST00000461328 AGTPBP1Q9UPW5 1226 aa18.58■□□□□ 0.56
VARS-219ENST00000461328 SLC45A1Q9Y2W3 748 aa18.58■□□□□ 0.56
VARS-219ENST00000461328 ERC2O15083 957 aa18.57■□□□□ 0.56
VARS-219ENST00000461328 GDF11O95390 407 aa18.57■□□□□ 0.56
VARS-219ENST00000461328 ADD2P35612 726 aa18.57■□□□□ 0.56
VARS-219ENST00000461328 TTC6Q86TZ1 520 aa18.57■□□□□ 0.56
VARS-219ENST00000461328 RWDD1Q9H446 243 aaPredicted RBP18.57■□□□□ 0.56
VARS-219ENST00000461328 PTPRFP10586 1907 aa18.57■□□□□ 0.56
VARS-219ENST00000461328 TTC41PQ6P2S7 1318 aa18.56■□□□□ 0.56
VARS-219ENST00000461328 TCRBV5S4A2TA0A5A2 114 aa18.56■□□□□ 0.56
VARS-219ENST00000461328 MBD4O95243 580 aa18.56■□□□□ 0.56
VARS-219ENST00000461328 GNRH1P01148 92 aa18.56■□□□□ 0.56
VARS-219ENST00000461328 HMGCS2P54868 508 aa18.56■□□□□ 0.56
VARS-219ENST00000461328 PROCA1Q8NCQ7 364 aaPredicted RBP18.56■□□□□ 0.56
VARS-219ENST00000461328 SMCR8Q8TEV9 937 aaPredicted RBP18.56■□□□□ 0.56
VARS-219ENST00000461328 GINM1Q9NU53 330 aa18.56■□□□□ 0.56
VARS-219ENST00000461328 SERPINB13Q9UIV8 391 aa18.56■□□□□ 0.56
VARS-219ENST00000461328 PNMA3Q9UL41 463 aa18.56■□□□□ 0.56
VARS-219ENST00000461328 PTCH2Q9Y6C5 1203 aa18.56■□□□□ 0.56
VARS-219ENST00000461328 MYH1P12882 1939 aa18.56■□□□□ 0.56
VARS-219ENST00000461328 FMNL1O95466 1100 aaPredicted RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms