RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 IDH1O75874 414 aaKnown RBP14.68□□□□□ -0.06
USP40-210ENST00000454354 CAP1Q01518 475 aa14.68□□□□□ -0.06
USP40-210ENST00000454354 PRRT2Q7Z6L0 340 aaPredicted RBP14.68□□□□□ -0.06
USP40-210ENST00000454354 CERS3Q8IU89 383 aa14.68□□□□□ -0.06
USP40-210ENST00000454354 ANTXR1Q9H6X2 564 aa14.68□□□□□ -0.06
USP40-210ENST00000454354 PICK1Q9NRD5 415 aa14.68□□□□□ -0.06
USP40-210ENST00000454354 AFG3L2Q9Y4W6 797 aa14.68□□□□□ -0.06
USP40-210ENST00000454354 TRIM17Q9Y577 477 aa14.68□□□□□ -0.06
USP40-210ENST00000454354 FAM196BA6NMK8 535 aa14.67□□□□□ -0.06
USP40-210ENST00000454354 APBB1O00213 710 aa14.67□□□□□ -0.06
USP40-210ENST00000454354 CYP7A1P22680 504 aa14.67□□□□□ -0.06
USP40-210ENST00000454354 MAP3K12Q12852 859 aa14.67□□□□□ -0.06
USP40-210ENST00000454354 TTF1Q15361 905 aaPredicted RBP14.67□□□□□ -0.06
USP40-210ENST00000454354 METTL16Q86W50 562 aaKnown RBP14.67□□□□□ -0.06
USP40-210ENST00000454354 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.67□□□□□ -0.06
USP40-210ENST00000454354 PI4KBQ9UBF8 816 aa14.67□□□□□ -0.06
USP40-210ENST00000454354 ZHX2Q9Y6X8 837 aa14.67□□□□□ -0.06
USP40-210ENST00000454354 KIAA0100Q14667 2235 aaKnown RBP14.67□□□□□ -0.06
USP40-210ENST00000454354 PDHXO00330 501 aa14.66□□□□□ -0.06
USP40-210ENST00000454354 IFIT2P09913 472 aaKnown RBP14.66□□□□□ -0.06
USP40-210ENST00000454354 DYNLL1P63167 89 aaKnown RBP14.66□□□□□ -0.06
USP40-210ENST00000454354 GPAT2Q6NUI2 795 aa14.66□□□□□ -0.06
USP40-210ENST00000454354 MAPKAPK5Q8IW41 473 aa14.66□□□□□ -0.06
USP40-210ENST00000454354 MAGEB6Q8N7X4 407 aa14.66□□□□□ -0.06
USP40-210ENST00000454354 TGFBRAP1Q8WUH2 860 aa14.66□□□□□ -0.06
USP40-210ENST00000454354 EFCC1Q9HA90 598 aa14.66□□□□□ -0.06
USP40-210ENST00000454354 PTPN22Q9Y2R2 807 aa14.66□□□□□ -0.06
USP40-210ENST00000454354 BAZ2AQ9UIF9 1905 aaKnown RBP14.66□□□□□ -0.06
USP40-210ENST00000454354 CAP2P40123 477 aa14.65□□□□□ -0.06
USP40-210ENST00000454354 C17orf99Q6UX52 265 aa14.65□□□□□ -0.06
USP40-210ENST00000454354 FASTKD5Q7L8L6 764 aaKnown RBP14.65□□□□□ -0.06
USP40-210ENST00000454354 TBC1D2Q9BYX2 928 aa14.65□□□□□ -0.06
USP40-210ENST00000454354 DNAJC18Q9H819 358 aa14.65□□□□□ -0.06
USP40-210ENST00000454354 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.65□□□□□ -0.06
USP40-210ENST00000454354 SLC45A1Q9Y2W3 748 aa14.65□□□□□ -0.06
USP40-210ENST00000454354 BRCA2P51587 3418 aa14.65□□□□□ -0.06
USP40-210ENST00000454354 SOX10P56693 466 aa14.64□□□□□ -0.07
USP40-210ENST00000454354 LACTBP83111 547 aaPredicted RBP14.64□□□□□ -0.07
USP40-210ENST00000454354 MLLT1Q03111 559 aaPredicted RBP14.64□□□□□ -0.07
USP40-210ENST00000454354 RRP1BQ14684 758 aaKnown RBP14.64□□□□□ -0.07
USP40-210ENST00000454354 ARHGEF6Q15052 776 aa14.64□□□□□ -0.07
USP40-210ENST00000454354 MIGA1Q8NAN2 632 aa14.64□□□□□ -0.07
USP40-210ENST00000454354 PARK7Q99497 189 aaKnown RBP14.64□□□□□ -0.07
USP40-210ENST00000454354 RIOK1Q9BRS2 568 aaKnown RBP14.64□□□□□ -0.07
USP40-210ENST00000454354 LRRCC1Q9C099 1032 aa14.64□□□□□ -0.07
USP40-210ENST00000454354 DOCK3Q8IZD9 2030 aa14.64□□□□□ -0.07
USP40-210ENST00000454354 PDE6AP16499 860 aa14.63□□□□□ -0.07
USP40-210ENST00000454354 ATP5JP18859 108 aa14.63□□□□□ -0.07
USP40-210ENST00000454354 CCDC84Q86UT8 332 aaPredicted RBP14.63□□□□□ -0.07
USP40-210ENST00000454354 FOXP4Q8IVH2 680 aaPredicted RBP14.63□□□□□ -0.07
USP40-210ENST00000454354 GINM1Q9NU53 330 aa14.63□□□□□ -0.07
USP40-210ENST00000454354 TCRBV5S4A2TA0A5A2 114 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 TRIM75PA6NK02 468 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 GOLIM4O00461 696 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 GNRH1P01148 92 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 HLA-DOAP06340 250 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 BCRP11274 1271 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 RRP1P56182 461 aaKnown RBP14.62□□□□□ -0.07
USP40-210ENST00000454354 KIF22Q14807 665 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 SLC9C2Q5TAH2 1124 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 GADL1Q6ZQY3 521 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 PROCA1Q8NCQ7 364 aaPredicted RBP14.62□□□□□ -0.07
USP40-210ENST00000454354 ARMC5Q96C12 935 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 DNAJC2Q99543 621 aaKnown RBP14.62□□□□□ -0.07
USP40-210ENST00000454354 ARHGAP39Q9C0H5 1083 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 DCTPP1Q9H773 170 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 PAG1Q9NWQ8 432 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 PALD1Q9ULE6 856 aa14.62□□□□□ -0.07
USP40-210ENST00000454354 USP17L5A8MUK1 530 aa14.61□□□□□ -0.07
USP40-210ENST00000454354 ASNSP08243 561 aa14.61□□□□□ -0.07
USP40-210ENST00000454354 USP5P45974 858 aa14.61□□□□□ -0.07
USP40-210ENST00000454354 CRACR2BQ8N4Y2 399 aaPredicted RBP14.61□□□□□ -0.07
USP40-210ENST00000454354 ZNF280CQ8ND82 737 aa14.61□□□□□ -0.07
USP40-210ENST00000454354 HAUS7Q99871 368 aa14.61□□□□□ -0.07
USP40-210ENST00000454354 WDR18Q9BV38 432 aa14.61□□□□□ -0.07
USP40-210ENST00000454354 EHD4Q9H223 541 aa14.61□□□□□ -0.07
USP40-210ENST00000454354 SAP30BPQ9UHR5 308 aaKnown RBP14.61□□□□□ -0.07
USP40-210ENST00000454354 CPA4Q9UI42 421 aa14.61□□□□□ -0.07
USP40-210ENST00000454354 AGTPBP1Q9UPW5 1226 aa14.61□□□□□ -0.07
USP40-210ENST00000454354 ZNF532Q9HCE3 1301 aa14.61□□□□□ -0.07
USP40-210ENST00000454354 MAGEB6P1A0A0J9YX57 407 aa14.6□□□□□ -0.07
USP40-210ENST00000454354 CYP2C8P10632 490 aa14.6□□□□□ -0.07
USP40-210ENST00000454354 PRMT2P55345 433 aa14.6□□□□□ -0.07
USP40-210ENST00000454354 SH3D19Q5HYK7 790 aa14.6□□□□□ -0.07
USP40-210ENST00000454354 EDC3Q96F86 508 aaKnown RBP14.6□□□□□ -0.07
USP40-210ENST00000454354 AS3MTQ9HBK9 375 aa14.6□□□□□ -0.07
USP40-210ENST00000454354 SMARCA5O60264 1052 aaPredicted RBP14.59□□□□□ -0.07
USP40-210ENST00000454354 CTGFP29279 349 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 JAG1P78504 1218 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 SPP2Q13103 211 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 TREML2Q5T2D2 321 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 TATDN1Q6P1N9 297 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 TRIM47Q96LD4 638 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 TRIM34Q9BYJ4 488 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 BOLA2Q9H3K6 86 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 SERPINB13Q9UIV8 391 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 ZBTB21Q9ULJ3 1066 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 PTCH2Q9Y6C5 1203 aa14.59□□□□□ -0.07
USP40-210ENST00000454354 PLXNB2O15031 1838 aa14.58□□□□□ -0.08
USP40-210ENST00000454354 GDF11O95390 407 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms