RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PI4KBQ9UBF8 816 aa25.34■■□□□ 1.65
SDC1-205ENST00000447124 PTCH2Q9Y6C5 1203 aa25.34■■□□□ 1.65
SDC1-205ENST00000447124 TNRC18O15417 2968 aaPredicted RBP25.34■■□□□ 1.65
SDC1-205ENST00000447124 ECM2O94769 699 aaPredicted RBP25.33■■□□□ 1.65
SDC1-205ENST00000447124 ARHGEF6Q15052 776 aa25.33■■□□□ 1.65
SDC1-205ENST00000447124 FASTKD5Q7L8L6 764 aaKnown RBP25.33■■□□□ 1.65
SDC1-205ENST00000447124 KIAA0100Q14667 2235 aaKnown RBP25.32■■□□□ 1.64
SDC1-205ENST00000447124 TRIM75PA6NK02 468 aa25.32■■□□□ 1.64
SDC1-205ENST00000447124 CAP2P40123 477 aa25.32■■□□□ 1.64
SDC1-205ENST00000447124 PDE3AQ14432 1141 aa25.32■■□□□ 1.64
SDC1-205ENST00000447124 GADL1Q6ZQY3 521 aa25.32■■□□□ 1.64
SDC1-205ENST00000447124 MAGEB6Q8N7X4 407 aa25.32■■□□□ 1.64
SDC1-205ENST00000447124 KIF1BPQ96EK5 621 aa25.32■■□□□ 1.64
SDC1-205ENST00000447124 DHX36Q9H2U1 1008 aaKnown RBP25.32■■□□□ 1.64
SDC1-205ENST00000447124 PALD1Q9ULE6 856 aa25.32■■□□□ 1.64
SDC1-205ENST00000447124 FLT1P17948 1338 aa25.32■■□□□ 1.64
SDC1-205ENST00000447124 POTEFA5A3E0 1075 aa25.31■■□□□ 1.64
SDC1-205ENST00000447124 HMMRO75330 724 aa25.31■■□□□ 1.64
SDC1-205ENST00000447124 BCRP11274 1271 aa25.31■■□□□ 1.64
SDC1-205ENST00000447124 JAG1P78504 1218 aa25.31■■□□□ 1.64
SDC1-205ENST00000447124 METTL16Q86W50 562 aaKnown RBP25.31■■□□□ 1.64
SDC1-205ENST00000447124 CLASRPQ8N2M8 674 aaKnown RBP25.31■■□□□ 1.64
SDC1-205ENST00000447124 MIGA1Q8NAN2 632 aa25.31■■□□□ 1.64
SDC1-205ENST00000447124 DNAJC18Q9H819 358 aa25.31■■□□□ 1.64
SDC1-205ENST00000447124 HERC5Q9UII4 1024 aaKnown RBP25.31■■□□□ 1.64
SDC1-205ENST00000447124 KIF22Q14807 665 aa25.3■■□□□ 1.64
SDC1-205ENST00000447124 FOXP4Q8IVH2 680 aaPredicted RBP25.3■■□□□ 1.64
SDC1-205ENST00000447124 PARK7Q99497 189 aaKnown RBP25.3■■□□□ 1.64
SDC1-205ENST00000447124 PDE4DIPQ5VU43 2346 aa25.3■■□□□ 1.64
SDC1-205ENST00000447124 ZSWIM8A7E2V4 1837 aa25.29■■□□□ 1.64
SDC1-205ENST00000447124 PHIPQ8WWQ0 1821 aa25.29■■□□□ 1.64
SDC1-205ENST00000447124 RAB11FIP3O75154 756 aa25.29■■□□□ 1.64
SDC1-205ENST00000447124 PSMC4P43686 418 aa25.29■■□□□ 1.64
SDC1-205ENST00000447124 SPP2Q13103 211 aa25.29■■□□□ 1.64
SDC1-205ENST00000447124 TRIM47Q96LD4 638 aa25.29■■□□□ 1.64
SDC1-205ENST00000447124 CHMP4BQ9H444 224 aaKnown RBP25.29■■□□□ 1.64
SDC1-205ENST00000447124 SAP30BPQ9UHR5 308 aaKnown RBP25.29■■□□□ 1.64
SDC1-205ENST00000447124 MAP3K12Q12852 859 aa25.28■■□□□ 1.64
SDC1-205ENST00000447124 BCL11AQ9H165 835 aa25.28■■□□□ 1.64
SDC1-205ENST00000447124 SLC45A1Q9Y2W3 748 aa25.28■■□□□ 1.64
SDC1-205ENST00000447124 CENPFP49454 3210 aa25.28■■□□□ 1.64
SDC1-205ENST00000447124 DOCK1Q14185 1865 aa25.28■■□□□ 1.64
SDC1-205ENST00000447124 SHROOM1Q2M3G4 852 aaPredicted RBP25.27■■□□□ 1.64
SDC1-205ENST00000447124 TREML2Q5T2D2 321 aa25.27■■□□□ 1.64
SDC1-205ENST00000447124 ZNF280CQ8ND82 737 aa25.27■■□□□ 1.64
SDC1-205ENST00000447124 ZNF333Q96JL9 665 aa25.27■■□□□ 1.64
SDC1-205ENST00000447124 USP17L5A8MUK1 530 aa25.26■■□□□ 1.63
SDC1-205ENST00000447124 GNRH1P01148 92 aa25.26■■□□□ 1.63
SDC1-205ENST00000447124 IFIT2P09913 472 aaKnown RBP25.26■■□□□ 1.63
SDC1-205ENST00000447124 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.26■■□□□ 1.63
SDC1-205ENST00000447124 AGTPBP1Q9UPW5 1226 aa25.26■■□□□ 1.63
SDC1-205ENST00000447124 MAST2Q6P0Q8 1798 aa25.26■■□□□ 1.63
SDC1-205ENST00000447124 SIPA1L1O43166 1804 aa25.26■■□□□ 1.63
SDC1-205ENST00000447124 OSBPP22059 807 aa25.25■■□□□ 1.63
SDC1-205ENST00000447124 SLC4A8Q2Y0W8 1093 aa25.25■■□□□ 1.63
SDC1-205ENST00000447124 EDC3Q96F86 508 aaKnown RBP25.25■■□□□ 1.63
SDC1-205ENST00000447124 RIOK1Q9BRS2 568 aaKnown RBP25.25■■□□□ 1.63
SDC1-205ENST00000447124 SRRDQ9UH36 339 aa25.25■■□□□ 1.63
SDC1-205ENST00000447124 PTPRFP10586 1907 aa25.24■■□□□ 1.63
SDC1-205ENST00000447124 CDK5RAP2Q96SN8 1893 aa25.24■■□□□ 1.63
SDC1-205ENST00000447124 FMNL1O95466 1100 aaPredicted RBP25.24■■□□□ 1.63
SDC1-205ENST00000447124 EN2P19622 333 aaPredicted RBP25.24■■□□□ 1.63
SDC1-205ENST00000447124 SLC9C1Q4G0N8 1177 aa25.24■■□□□ 1.63
SDC1-205ENST00000447124 SH3TC2Q8TF17 1288 aa25.24■■□□□ 1.63
SDC1-205ENST00000447124 GOLIM4O00461 696 aa25.23■■□□□ 1.63
SDC1-205ENST00000447124 USP5P45974 858 aa25.23■■□□□ 1.63
SDC1-205ENST00000447124 HMGCS2P54868 508 aa25.23■■□□□ 1.63
SDC1-205ENST00000447124 PRMT2P55345 433 aa25.23■■□□□ 1.63
SDC1-205ENST00000447124 TTF1Q15361 905 aaPredicted RBP25.23■■□□□ 1.63
SDC1-205ENST00000447124 SH3D19Q5HYK7 790 aa25.23■■□□□ 1.63
SDC1-205ENST00000447124 TMED8Q6PL24 325 aaPredicted RBP25.23■■□□□ 1.63
SDC1-205ENST00000447124 PROCA1Q8NCQ7 364 aaPredicted RBP25.23■■□□□ 1.63
SDC1-205ENST00000447124 WDR18Q9BV38 432 aa25.23■■□□□ 1.63
SDC1-205ENST00000447124 TBC1D2Q9BYX2 928 aa25.23■■□□□ 1.63
SDC1-205ENST00000447124 GDF11O95390 407 aa25.22■■□□□ 1.63
SDC1-205ENST00000447124 PDE6AP16499 860 aa25.22■■□□□ 1.63
SDC1-205ENST00000447124 SLC9C2Q5TAH2 1124 aa25.22■■□□□ 1.63
SDC1-205ENST00000447124 NBPF11Q86T75 865 aa25.22■■□□□ 1.63
SDC1-205ENST00000447124 CRACR2BQ8N4Y2 399 aaPredicted RBP25.22■■□□□ 1.63
SDC1-205ENST00000447124 DNAJC2Q99543 621 aaKnown RBP25.22■■□□□ 1.63
SDC1-205ENST00000447124 BOLA2Q9H3K6 86 aa25.22■■□□□ 1.63
SDC1-205ENST00000447124 TCRBV5S4A2TA0A5A2 114 aa25.21■■□□□ 1.63
SDC1-205ENST00000447124 SMARCA5O60264 1052 aaPredicted RBP25.21■■□□□ 1.63
SDC1-205ENST00000447124 MYCP01106 439 aaPredicted RBP25.21■■□□□ 1.63
SDC1-205ENST00000447124 HLA-DOAP06340 250 aa25.21■■□□□ 1.63
SDC1-205ENST00000447124 HOXD10P28358 340 aa25.21■■□□□ 1.63
SDC1-205ENST00000447124 CERS3Q8IU89 383 aa25.21■■□□□ 1.63
SDC1-205ENST00000447124 ASNSP08243 561 aa25.2■■□□□ 1.62
SDC1-205ENST00000447124 ATP5JP18859 108 aa25.2■■□□□ 1.62
SDC1-205ENST00000447124 SLFNL1Q499Z3 407 aa25.2■■□□□ 1.62
SDC1-205ENST00000447124 AS3MTQ9HBK9 375 aa25.2■■□□□ 1.62
SDC1-205ENST00000447124 GABRQQ9UN88 632 aa25.2■■□□□ 1.62
SDC1-205ENST00000447124 FOCADQ5VW36 1801 aa25.2■■□□□ 1.62
SDC1-205ENST00000447124 ZNF532Q9HCE3 1301 aa25.19■■□□□ 1.62
SDC1-205ENST00000447124 MAGEB6P1A0A0J9YX57 407 aa25.19■■□□□ 1.62
SDC1-205ENST00000447124 TATDN1Q6P1N9 297 aa25.19■■□□□ 1.62
SDC1-205ENST00000447124 TMEM106CQ9BVX2 250 aa25.19■■□□□ 1.62
SDC1-205ENST00000447124 TRIM34Q9BYJ4 488 aa25.19■■□□□ 1.62
SDC1-205ENST00000447124 PLCD1P51178 756 aa25.18■■□□□ 1.62
SDC1-205ENST00000447124 FCGRTP55899 365 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms