RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 PPP1R12AO14974 1030 aaPredicted RBP8.43□□□□□ -1.06
CPSF6-202ENST00000435070 ZNF185O15231 689 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 SARNPP82979 210 aaKnown RBP8.43□□□□□ -1.06
CPSF6-202ENST00000435070 PSMB7Q99436 277 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 TUBGCP6Q96RT7 1819 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 E7EWF7 191 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 PDHBP11177 359 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 NEUROD6Q96NK8 337 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 MAN1B1Q9UKM7 699 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 SEC24CP53992 1094 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 ARHGEF25Q86VW2 580 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 NUP88Q99567 741 aaPredicted RBP8.42□□□□□ -1.06
CPSF6-202ENST00000435070 PTPRMP28827 1452 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 POLR2DO15514 142 aaKnown RBP8.42□□□□□ -1.06
CPSF6-202ENST00000435070 SLC7A5Q01650 507 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 GPIHBP1Q8IV16 184 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 NUTM2AQ8IVF1 878 aaPredicted RBP8.42□□□□□ -1.06
CPSF6-202ENST00000435070 DYDC1Q8WWB3 177 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 IFT172Q9UG01 1749 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 AFMP43652 599 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 SLC39A14Q15043 492 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 DBNDD2Q9BQY9 259 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 KLC4Q9NSK0 619 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 AARSP49588 968 aaKnown RBP eCLIP8.42□□□□□ -1.06
CPSF6-202ENST00000435070 C2orf54Q08AI8 447 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 SF3B2Q13435 895 aaKnown RBP8.42□□□□□ -1.06
CPSF6-202ENST00000435070 EZH2Q15910 746 aaKnown RBP8.42□□□□□ -1.06
CPSF6-202ENST00000435070 AIDAQ96BJ3 306 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 CCDC114Q96M63 670 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 VPS16Q9H269 839 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 SERTAD1Q9UHV2 236 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 ATP1A1P05023 1023 aaKnown RBP8.42□□□□□ -1.06
CPSF6-202ENST00000435070 GRIN1Q05586 938 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 PROSER3Q2NL68 480 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 USPL1Q5W0Q7 1092 aa8.42□□□□□ -1.06
CPSF6-202ENST00000435070 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.42□□□□□ -1.06
CPSF6-202ENST00000435070 EDC4Q6P2E9 1401 aaKnown RBP8.42□□□□□ -1.06
CPSF6-202ENST00000435070 BACH1O14867 736 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 GUCY1A3Q02108 690 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 KIF23Q02241 960 aaPredicted RBP8.41□□□□□ -1.06
CPSF6-202ENST00000435070 CCDC40Q4G0X9 1142 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 STAMQ92783 540 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 PHKBQ93100 1093 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 FAXDC2Q96IV6 333 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 CALR3Q96L12 384 aaKnown RBP8.41□□□□□ -1.06
CPSF6-202ENST00000435070 MED15Q96RN5 788 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 CHP1Q99653 195 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 DBNLQ9UJU6 430 aaKnown RBP8.41□□□□□ -1.06
CPSF6-202ENST00000435070 MEFVO15553 781 aaPredicted RBP8.41□□□□□ -1.06
CPSF6-202ENST00000435070 PPARAQ07869 468 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 WDR93Q6P2C0 686 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 VPS37DQ86XT2 251 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 TRIM6Q9C030 488 aaPredicted RBP8.41□□□□□ -1.06
CPSF6-202ENST00000435070 JADE2Q9NQC1 790 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 GBP2P32456 591 aaPredicted RBP8.41□□□□□ -1.06
CPSF6-202ENST00000435070 NR1I3Q14994 352 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 PCMTD1Q96MG8 357 aaPredicted RBP8.41□□□□□ -1.06
CPSF6-202ENST00000435070 RNF225M0QZC1 329 aaPredicted RBP8.41□□□□□ -1.06
CPSF6-202ENST00000435070 FNTAP49354 379 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 HDAC7Q8WUI4 952 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 CPS1P31327 1500 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 ARHGEF10O15013 1369 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 ERVK-24P63145 666 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 APBA1Q02410 837 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 B4GALNT4Q76KP1 1039 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 CCDC82Q8N4S0 544 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 JMYQ8N9B5 988 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 ALG1Q9BT22 464 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 VIPAS39Q9H9C1 493 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 MCM8Q9UJA3 840 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 PREX1Q8TCU6 1659 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 GRIN2DO15399 1336 aa8.41□□□□□ -1.06
CPSF6-202ENST00000435070 ZC3H4Q9UPT8 1303 aaKnown RBP8.41□□□□□ -1.06
CPSF6-202ENST00000435070 UBE2Q2LH0YL09 131 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 HMGB1P09429 215 aaKnown RBP8.4□□□□□ -1.06
CPSF6-202ENST00000435070 GCKP35557 465 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 RASGRP2Q7LDG7 609 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 MSL3Q8N5Y2 521 aaKnown RBP8.4□□□□□ -1.06
CPSF6-202ENST00000435070 TTF2Q9UNY4 1162 aaKnown RBP8.4□□□□□ -1.06
CPSF6-202ENST00000435070 SAR1BQ9Y6B6 198 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 IRF6O14896 467 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 N4BP3O15049 544 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 MFAP3LO75121 409 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 KRT9P35527 623 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 POSTNQ15063 836 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 TBC1D31Q96DN5 1066 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 PANX2Q96RD6 677 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 LGR6Q9HBX8 967 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 KRT14P02533 472 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 TUBBP07437 444 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 CDC25CP30307 473 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 TFCP2Q12800 502 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 TEX11Q8IYF3 940 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 ZNF609O15014 1411 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 PPLO60437 1756 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 SHOX2O60902 331 aaPredicted RBP8.4□□□□□ -1.06
CPSF6-202ENST00000435070 ARHGAP25P42331 645 aa8.4□□□□□ -1.06
CPSF6-202ENST00000435070 CCNHP51946 323 aaPredicted RBP8.4□□□□□ -1.06
CPSF6-202ENST00000435070 MAP2K1Q02750 393 aaPredicted RBP8.4□□□□□ -1.06
CPSF6-202ENST00000435070 TRDNQ13061 729 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms