RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 HOMER1Q86YM7 354 aa17.94■□□□□ 0.46
SCARF1-203ENST00000434376 ARHGEF1Q92888 912 aaKnown RBP17.94■□□□□ 0.46
SCARF1-203ENST00000434376 TNS2Q63HR2 1409 aa17.94■□□□□ 0.46
SCARF1-203ENST00000434376 SAMD1Q6SPF0 538 aaPredicted RBP17.93■□□□□ 0.46
SCARF1-203ENST00000434376 CCDC112Q8NEF3 446 aa17.93■□□□□ 0.46
SCARF1-203ENST00000434376 ZMYM6O95789 1325 aa17.93■□□□□ 0.46
SCARF1-203ENST00000434376 TULP1O00294 542 aaPredicted RBP17.93■□□□□ 0.46
SCARF1-203ENST00000434376 ATP2B2Q01814 1243 aa17.93■□□□□ 0.46
SCARF1-203ENST00000434376 ALDH8A1Q9H2A2 487 aaPredicted RBP17.93■□□□□ 0.46
SCARF1-203ENST00000434376 ANO10Q9NW15 660 aa17.93■□□□□ 0.46
SCARF1-203ENST00000434376 ABCC12Q96J65 1359 aa17.93■□□□□ 0.46
SCARF1-203ENST00000434376 POLR2DO15514 142 aaKnown RBP17.93■□□□□ 0.46
SCARF1-203ENST00000434376 SLURP2P0DP57 97 aa17.93■□□□□ 0.46
SCARF1-203ENST00000434376 HIBADHP31937 336 aaKnown RBP17.93■□□□□ 0.46
SCARF1-203ENST00000434376 MECOMQ03112 1051 aa17.93■□□□□ 0.46
SCARF1-203ENST00000434376 GRIK5Q16478 980 aa17.93■□□□□ 0.46
SCARF1-203ENST00000434376 MAPKAPK5Q8IW41 473 aa17.93■□□□□ 0.46
SCARF1-203ENST00000434376 FAM217BQ9NTX9 383 aaPredicted RBP17.93■□□□□ 0.46
SCARF1-203ENST00000434376 JCADQ9P266 1359 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 C6orf229H3BNL8 230 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 CDKL5O76039 1030 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 SERPINC1P01008 464 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 DHX8Q14562 1220 aaKnown RBP17.92■□□□□ 0.46
SCARF1-203ENST00000434376 AK7Q96M32 723 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 AGXT2Q9BYV1 514 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 MAPK8IP1Q9UQF2 711 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 LONRF3Q496Y0 759 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.92■□□□□ 0.46
SCARF1-203ENST00000434376 GPKOWQ92917 476 aaPredicted RBP eCLIP17.92■□□□□ 0.46
SCARF1-203ENST00000434376 DHX58Q96C10 678 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 FBXO3Q9UK99 471 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 USP27XA6NNY8 438 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 ADALQ6DHV7 355 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 TPTE2Q6XPS3 522 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 SMYD4Q8IYR2 804 aaPredicted RBP17.92■□□□□ 0.46
SCARF1-203ENST00000434376 KCNG4Q8TDN1 519 aa17.92■□□□□ 0.46
SCARF1-203ENST00000434376 SPATA31A5Q5VU36 1347 aa17.91■□□□□ 0.46
SCARF1-203ENST00000434376 SPATA31A7Q8IWB4 1347 aa17.91■□□□□ 0.46
SCARF1-203ENST00000434376 PES1O00541 588 aaKnown RBP17.91■□□□□ 0.46
SCARF1-203ENST00000434376 CDK11BP21127 795 aaKnown RBP17.91■□□□□ 0.46
SCARF1-203ENST00000434376 CFAP100Q494V2 611 aa17.91■□□□□ 0.46
SCARF1-203ENST00000434376 FMR1NBQ8N0W7 255 aaPredicted RBP17.91■□□□□ 0.46
SCARF1-203ENST00000434376 FANCBQ8NB91 859 aa17.91■□□□□ 0.46
SCARF1-203ENST00000434376 ESR2Q92731 530 aa17.91■□□□□ 0.46
SCARF1-203ENST00000434376 SPTLC3Q9NUV7 552 aa17.91■□□□□ 0.46
SCARF1-203ENST00000434376 PICALMQ13492 652 aa17.91■□□□□ 0.46
SCARF1-203ENST00000434376 GPIHBP1Q8IV16 184 aa17.91■□□□□ 0.46
SCARF1-203ENST00000434376 TRERF1Q96PN7 1200 aa17.91■□□□□ 0.46
SCARF1-203ENST00000434376 RTEL1Q9NZ71 1219 aa17.91■□□□□ 0.46
SCARF1-203ENST00000434376 KIAA1468Q9P260 1216 aa17.9■□□□□ 0.46
SCARF1-203ENST00000434376 SALL1Q9NSC2 1324 aa17.9■□□□□ 0.46
SCARF1-203ENST00000434376 SHC4Q6S5L8 630 aa17.9■□□□□ 0.46
SCARF1-203ENST00000434376 TGFBRAP1Q8WUH2 860 aa17.9■□□□□ 0.46
SCARF1-203ENST00000434376 CPLX3Q8WVH0 158 aa17.9■□□□□ 0.46
SCARF1-203ENST00000434376 GTPBP4Q9BZE4 634 aaKnown RBP17.9■□□□□ 0.46
SCARF1-203ENST00000434376 KRT23Q9C075 422 aa17.9■□□□□ 0.46
SCARF1-203ENST00000434376 XPO4Q9C0E2 1151 aaKnown RBP17.9■□□□□ 0.46
SCARF1-203ENST00000434376 MKNK2Q9HBH9 465 aa17.9■□□□□ 0.46
SCARF1-203ENST00000434376 ZBTB22O15209 634 aa17.9■□□□□ 0.46
SCARF1-203ENST00000434376 SKILP12757 684 aa17.9■□□□□ 0.46
SCARF1-203ENST00000434376 EARS2Q5JPH6 523 aaKnown RBP17.9■□□□□ 0.46
SCARF1-203ENST00000434376 IQCA1Q86XH1 822 aa17.9■□□□□ 0.46
SCARF1-203ENST00000434376 SMARCC1Q92922 1105 aaPredicted RBP17.9■□□□□ 0.46
SCARF1-203ENST00000434376 USP17L3A6NCW0 530 aa17.89■□□□□ 0.45
SCARF1-203ENST00000434376 USP17L4A6NCW7 530 aa17.89■□□□□ 0.45
SCARF1-203ENST00000434376 USP17L1Q7RTZ2 530 aa17.89■□□□□ 0.45
SCARF1-203ENST00000434376 TMEM87BQ96K49 555 aa17.89■□□□□ 0.45
SCARF1-203ENST00000434376 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.89■□□□□ 0.45
SCARF1-203ENST00000434376 TAF1P21675 1872 aa17.89■□□□□ 0.45
SCARF1-203ENST00000434376 UTP14CQ5TAP6 766 aaKnown RBP17.89■□□□□ 0.45
SCARF1-203ENST00000434376 MSL1Q68DK7 614 aa17.89■□□□□ 0.45
SCARF1-203ENST00000434376 ENAHQ8N8S7 591 aaPredicted RBP17.89■□□□□ 0.45
SCARF1-203ENST00000434376 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.88■□□□□ 0.45
SCARF1-203ENST00000434376 ENGASEQ8NFI3 743 aa17.88■□□□□ 0.45
SCARF1-203ENST00000434376 ZNF384Q8TF68 577 aa17.88■□□□□ 0.45
SCARF1-203ENST00000434376 MCM7P33993 719 aa17.88■□□□□ 0.45
SCARF1-203ENST00000434376 NCBP1Q09161 790 aaKnown RBP17.88■□□□□ 0.45
SCARF1-203ENST00000434376 CATIPQ7Z7H3 387 aa17.88■□□□□ 0.45
SCARF1-203ENST00000434376 EPSTI1Q96J88 318 aa17.88■□□□□ 0.45
SCARF1-203ENST00000434376 KCNH3Q9ULD8 1083 aa17.88■□□□□ 0.45
SCARF1-203ENST00000434376 VWA3AA6NCI4 1184 aa17.88■□□□□ 0.45
SCARF1-203ENST00000434376 WNT7AO00755 349 aa17.88■□□□□ 0.45
SCARF1-203ENST00000434376 SERTAD1Q9UHV2 236 aa17.88■□□□□ 0.45
SCARF1-203ENST00000434376 MYO5AQ9Y4I1 1855 aaKnown RBP17.87■□□□□ 0.45
SCARF1-203ENST00000434376 TRIM37O94972 964 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 GTF2F1P35269 517 aaKnown RBP eCLIP17.87■□□□□ 0.453e-7■■■■■ 35.7
SCARF1-203ENST00000434376 IQCB1Q15051 598 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 CLEC10AQ8IUN9 316 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 PCDHA5Q9Y5H7 936 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 RFX7Q2KHR2 1363 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 ERCC3P19447 782 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 NTRK3Q16288 839 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 TRAPPC3LQ5T215 181 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 PIK3AP1Q6ZUJ8 805 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 ADAMTS3O15072 1205 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 TPM3P06753 285 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 PRR29P0C7W0 189 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 NLRP5P59047 1200 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 NOSTRINQ8IVI9 506 aa17.87■□□□□ 0.45
SCARF1-203ENST00000434376 DHX40Q8IX18 779 aaKnown RBP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms