RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ARID4AP29374 1257 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-207ENST00000422797 ADORA1P30542 326 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 PLA2G4AP47712 749 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 SARSP49591 514 aaKnown RBP12.59□□□□□ -0.39
LIMS1-207ENST00000422797 SLC20A2Q08357 652 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 MUM1L1Q5H9M0 696 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 TMEM67Q5HYA8 995 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 METTL24Q5JXM2 366 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 CC2D1AQ6P1N0 951 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-207ENST00000422797 HNRNPLLQ8WVV9 542 aaKnown RBP12.59□□□□□ -0.39
LIMS1-207ENST00000422797 PUS3Q9BZE2 481 aaKnown RBP12.59□□□□□ -0.39
LIMS1-207ENST00000422797 GBP3Q9H0R5 595 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 ZBTB3Q9H5J0 574 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 LY9Q9HBG7 655 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 PSD3Q9NYI0 1048 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 MAN1B1Q9UKM7 699 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 SLC12A7Q9Y666 1083 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 UBN2Q6ZU65 1347 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 COL22A1Q8NFW1 1626 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-207ENST00000422797 AKR1B15C9JRZ8 316 aaPredicted RBP12.58□□□□□ -0.4
LIMS1-207ENST00000422797 DEXIO95424 95 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 XBP1P17861 261 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 TXLNAP40222 546 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 LONRF3Q496Y0 759 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 FILIP1LQ4L180 1135 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 SLC9C2Q5TAH2 1124 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 TMED8Q6PL24 325 aaPredicted RBP12.58□□□□□ -0.4
LIMS1-207ENST00000422797 TBC1D10CQ8IV04 446 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 IGDCC4Q8TDY8 1250 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 DPF2Q92785 391 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 RNF41Q9H4P4 317 aaPredicted RBP12.58□□□□□ -0.4
LIMS1-207ENST00000422797 CWC15Q9P013 229 aaKnown RBP12.58□□□□□ -0.4
LIMS1-207ENST00000422797 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.58□□□□□ -0.4
LIMS1-207ENST00000422797 NFE2L3Q9Y4A8 694 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 SRPRBQ9Y5M8 271 aaKnown RBP12.58□□□□□ -0.4
LIMS1-207ENST00000422797 ECM29Q5VYK3 1845 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 ARAP2Q8WZ64 1704 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 LRP5O75197 1615 aa12.58□□□□□ -0.4
LIMS1-207ENST00000422797 ITIH6Q6UXX5 1313 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 A0A1B0GTH6 734 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 ANKRD18BA2A2Z9 1011 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 IGSF3O75054 1194 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 EIF3JO75822 258 aaKnown RBP12.57□□□□□ -0.4
LIMS1-207ENST00000422797 TRIM14Q14142 442 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 CYB5R4Q7L1T6 521 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 PPFIBP1Q86W92 1011 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 MICU3Q86XE3 530 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 TC2NQ8N9U0 490 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 SPATA20Q8TB22 786 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 AIDAQ96BJ3 306 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 RBM33Q96EV2 1170 aaKnown RBP12.57□□□□□ -0.4
LIMS1-207ENST00000422797 NACAP1Q9BZK3 213 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 NBPF3Q9H094 633 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 MYO1AQ9UBC5 1043 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 FBXO2Q9UK22 296 aaPredicted RBP12.57□□□□□ -0.4
LIMS1-207ENST00000422797 RIPOR2Q9Y4F9 1068 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 RTL9Q8NET4 1388 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 ERICH2A1L162 156 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 PATL2C9JE40 543 aaKnown RBP12.57□□□□□ -0.4
LIMS1-207ENST00000422797 NPHP1O15259 732 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 KIF5CO60282 957 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 PPFIA3O75145 1194 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 A1BGP04217 495 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 APPP05067 770 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 PDE6AP16499 860 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 MCAMP43121 646 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 SPAG1Q07617 926 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 SPATA1Q5VX52 437 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 CNGA4Q8IV77 575 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 PDILTQ8N807 584 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 EXOC4Q96A65 974 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 KIFC2Q96AC6 838 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 SLC26A6Q9BXS9 759 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 INTS13Q9NVM9 706 aa12.57□□□□□ -0.4
LIMS1-207ENST00000422797 AATFQ9NY61 560 aaKnown RBP eCLIP12.57□□□□□ -0.4
LIMS1-207ENST00000422797 TTF2Q9UNY4 1162 aaKnown RBP12.57□□□□□ -0.4
LIMS1-207ENST00000422797 MROH5Q6ZUA9 1318 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 IFIT3O14879 490 aaKnown RBP12.56□□□□□ -0.4
LIMS1-207ENST00000422797 TBC1D8O95759 1140 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 FECHP22830 423 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 CDC27P30260 824 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 MAP3K12Q12852 859 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 SCARF1Q14162 830 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 NR1I3Q14994 352 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 RTN1Q16799 776 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 SRGAP1Q7Z6B7 1085 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 DIS3L2Q8IYB7 885 aaKnown RBP12.56□□□□□ -0.4
LIMS1-207ENST00000422797 STK11IPQ8N1F8 1099 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 STAG1Q8WVM7 1258 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 FERMT2Q96AC1 680 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 STRBPQ96SI9 672 aaKnown RBP12.56□□□□□ -0.4
LIMS1-207ENST00000422797 NAPBQ9H115 298 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 ACBD3Q9H3P7 528 aa12.56□□□□□ -0.4
LIMS1-207ENST00000422797 SPATA31A3Q5VYP0 1347 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 PNPLA7Q6ZV29 1317 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 ZNF532Q9HCE3 1301 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 B4E1Z4 1266 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 TMEM232C9JQI7 657 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 ZBTB22O15209 634 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 RANBP6O60518 1105 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms