RNA–Protein interactions for RNA: ENST00000419442.1

RAPGEF1-205, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 5

Gene RAPGEF1, Length 683 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-205ENST00000419442 PRDX5P30044 214 aa13.22□□□□□ -0.29
RAPGEF1-205ENST00000419442 HOXD11P31277 338 aaPredicted RBP13.22□□□□□ -0.29
RAPGEF1-205ENST00000419442 SHHQ15465 462 aa13.22□□□□□ -0.29
RAPGEF1-205ENST00000419442 CCDC84Q86UT8 332 aaPredicted RBP13.22□□□□□ -0.29
RAPGEF1-205ENST00000419442 USP6NLQ92738 828 aa13.22□□□□□ -0.29
RAPGEF1-205ENST00000419442 SUCLG2Q96I99 432 aa13.22□□□□□ -0.29
RAPGEF1-205ENST00000419442 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.22□□□□□ -0.29
RAPGEF1-205ENST00000419442 UTYO14607 1347 aa13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 SALL1Q9NSC2 1324 aa13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 DDTLA6NHG4 134 aaPredicted RBP13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 SLURP2P0DP57 97 aa13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 CCND3P30281 292 aaPredicted RBP13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 PABPC4Q13310 644 aaKnown RBP eCLIP13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 CCDC27Q2M243 656 aa13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 SH3D19Q5HYK7 790 aa13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 NUDT12Q9BQG2 462 aa13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 TBC1D2Q9BYX2 928 aa13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 ASCC2Q9H1I8 757 aaPredicted RBP13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 C9orf78Q9NZ63 289 aaPredicted RBP13.21□□□□□ -0.29
RAPGEF1-205ENST00000419442 LAMA2P24043 3122 aaKnown RBP13.21□□□□□ -0.3
RAPGEF1-205ENST00000419442 GAKO14976 1311 aa13.2□□□□□ -0.3
RAPGEF1-205ENST00000419442 IL16Q14005 1332 aa13.2□□□□□ -0.3
RAPGEF1-205ENST00000419442 TBC1D12O60347 775 aa13.2□□□□□ -0.3
RAPGEF1-205ENST00000419442 VAMP4O75379 141 aa13.2□□□□□ -0.3
RAPGEF1-205ENST00000419442 IFIT1P09914 478 aaKnown RBP13.2□□□□□ -0.3
RAPGEF1-205ENST00000419442 ZKSCAN1P17029 563 aaPredicted RBP13.2□□□□□ -0.3
RAPGEF1-205ENST00000419442 PUM3Q15397 648 aaKnown RBP13.2□□□□□ -0.3
RAPGEF1-205ENST00000419442 C9orf50Q5SZB4 431 aa13.2□□□□□ -0.3
RAPGEF1-205ENST00000419442 FAM122AQ96E09 287 aa13.2□□□□□ -0.3
RAPGEF1-205ENST00000419442 LDHBP07195 334 aaKnown RBP13.19□□□□□ -0.3
RAPGEF1-205ENST00000419442 SPP2Q13103 211 aa13.19□□□□□ -0.3
RAPGEF1-205ENST00000419442 USP38Q8NB14 1042 aa13.19□□□□□ -0.3
RAPGEF1-205ENST00000419442 ZNF280CQ8ND82 737 aa13.19□□□□□ -0.3
RAPGEF1-205ENST00000419442 MUC3AQ02505 3323 aa13.18□□□□□ -0.3
RAPGEF1-205ENST00000419442 NCOR1O75376 2440 aa13.18□□□□□ -0.3
RAPGEF1-205ENST00000419442 ZEB1P37275 1124 aaPredicted RBP13.18□□□□□ -0.3
RAPGEF1-205ENST00000419442 HMGCS2P54868 508 aa13.18□□□□□ -0.3
RAPGEF1-205ENST00000419442 MORN1Q5T089 497 aa13.18□□□□□ -0.3
RAPGEF1-205ENST00000419442 ZSCAN29Q8IWY8 852 aaPredicted RBP13.18□□□□□ -0.3
RAPGEF1-205ENST00000419442 ANKRD44Q8N8A2 993 aa13.18□□□□□ -0.3
RAPGEF1-205ENST00000419442 SENP6Q9GZR1 1112 aaPredicted RBP13.18□□□□□ -0.3
RAPGEF1-205ENST00000419442 OSBPL5Q9H0X9 879 aaPredicted RBP13.18□□□□□ -0.3
RAPGEF1-205ENST00000419442 DDX4Q9NQI0 724 aaKnown RBP13.18□□□□□ -0.3
RAPGEF1-205ENST00000419442 NBPF7P0C2Y1 421 aaPredicted RBP13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 MAPK4P31152 587 aa13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 HOXA7P31268 230 aaPredicted RBP13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 RGS2P41220 211 aa13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 RTP1P59025 263 aa13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 CCL14Q16627 93 aa13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 WWC1Q8IX03 1113 aa13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 FAM163AQ96GL9 167 aaPredicted RBP13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 APBA2Q99767 749 aa13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 SRCIN1Q9C0H9 1055 aa13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 BICC1Q9H694 974 aaKnown RBP13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 TXNRD2Q9NNW7 524 aa13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 PRKAG2Q9UGJ0 569 aa13.17□□□□□ -0.3
RAPGEF1-205ENST00000419442 FANCIQ9NVI1 1328 aa13.16□□□□□ -0.3
RAPGEF1-205ENST00000419442 DNM1LO00429 736 aa13.16□□□□□ -0.3
RAPGEF1-205ENST00000419442 SLC5A1P13866 664 aa13.16□□□□□ -0.3
RAPGEF1-205ENST00000419442 PDE3AQ14432 1141 aa13.16□□□□□ -0.3
RAPGEF1-205ENST00000419442 GPRC5AQ8NFJ5 357 aa13.16□□□□□ -0.3
RAPGEF1-205ENST00000419442 LPIN2Q92539 896 aa13.16□□□□□ -0.3
RAPGEF1-205ENST00000419442 SIPA1L1O43166 1804 aa13.16□□□□□ -0.3
RAPGEF1-205ENST00000419442 CDH23Q9H251 3354 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 USP17L5A8MUK1 530 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 SEMA3EO15041 775 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 MSCO60682 206 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 ATN1P54259 1190 aaPredicted RBP13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 HERVK_113P62684 666 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 MAP3K12Q12852 859 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 SNX17Q15036 470 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 KLHDC4Q8TBB5 520 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 LPAR1Q92633 364 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 P2RX7Q99572 595 aaKnown RBP13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 WDR18Q9BV38 432 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 RBPJLQ9UBG7 517 aa13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 DDX20Q9UHI6 824 aaKnown RBP13.15□□□□□ -0.3
RAPGEF1-205ENST00000419442 SYNGAP1Q96PV0 1343 aa13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 PEX10O60683 326 aa13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 CAP2P40123 477 aa13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 IRX3P78415 501 aaPredicted RBP13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 MAP2K5Q13163 448 aa13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 RRP1BQ14684 758 aaKnown RBP13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 Q3C1V9 767 aa13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 GPR142Q7Z601 462 aa13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 ATXN2LQ8WWM7 1075 aaKnown RBP13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 BADQ92934 168 aa13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 PORCNQ9H237 461 aa13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 ARIH1Q9Y4X5 557 aaPredicted RBP13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 DNAH12Q6ZR08 3092 aa13.14□□□□□ -0.31
RAPGEF1-205ENST00000419442 FAM196BA6NMK8 535 aa13.13□□□□□ -0.31
RAPGEF1-205ENST00000419442 EYA2O00167 538 aa13.13□□□□□ -0.31
RAPGEF1-205ENST00000419442 IGHA2P01877 340 aa13.13□□□□□ -0.31
RAPGEF1-205ENST00000419442 RHBDL3P58872 404 aa13.13□□□□□ -0.31
RAPGEF1-205ENST00000419442 ERVK-9P63128 1117 aa13.13□□□□□ -0.31
RAPGEF1-205ENST00000419442 ERVK-24P63145 666 aa13.13□□□□□ -0.31
RAPGEF1-205ENST00000419442 GRIN2CQ14957 1233 aa13.13□□□□□ -0.31
RAPGEF1-205ENST00000419442 POTEEQ6S8J3 1075 aa13.13□□□□□ -0.31
RAPGEF1-205ENST00000419442 SLC39A5Q6ZMH5 540 aa13.13□□□□□ -0.31
RAPGEF1-205ENST00000419442 PLEKHH3Q7Z736 793 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms