RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 MYOM1P52179 1685 aa13.51□□□□□ -0.25
PTPRF-205ENST00000414879 hCG_1984214I3L0E3 225 aa13.51□□□□□ -0.25
PTPRF-205ENST00000414879 CYP27B1O15528 508 aa13.51□□□□□ -0.25
PTPRF-205ENST00000414879 GBP2P32456 591 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-205ENST00000414879 SSR1P43307 286 aaKnown RBP13.51□□□□□ -0.25
PTPRF-205ENST00000414879 GTF2IP78347 998 aa13.51□□□□□ -0.25
PTPRF-205ENST00000414879 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-205ENST00000414879 ZNF713Q8N859 430 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-205ENST00000414879 PPEF1O14829 653 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-205ENST00000414879 PABPC4Q13310 644 aaKnown RBP eCLIP13.51□□□□□ -0.25
PTPRF-205ENST00000414879 TMCO3Q6UWJ1 677 aa13.51□□□□□ -0.25
PTPRF-205ENST00000414879 MLKLQ8NB16 471 aa13.51□□□□□ -0.25
PTPRF-205ENST00000414879 ZSCAN10Q96SZ4 725 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-205ENST00000414879 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.51□□□□□ -0.25
PTPRF-205ENST00000414879 CCDC66A2RUB6 948 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 TRIM28Q13263 835 aaKnown RBP13.5□□□□□ -0.25
PTPRF-205ENST00000414879 PROSER3Q2NL68 480 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 MSANTD4Q8NCY6 345 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 PRIMPOLQ96LW4 560 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 CRACR2AQ9BSW2 395 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 SEC24BO95487 1268 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 GSPT1P15170 499 aaKnown RBP13.5□□□□□ -0.25
PTPRF-205ENST00000414879 HOXA7P31268 230 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-205ENST00000414879 MYL5Q02045 173 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 LUZP1Q86V48 1076 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 SEPT12Q8IYM1 358 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 ZNF654Q8IZM8 581 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 TGFBRAP1Q8WUH2 860 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 SRRTQ9BXP5 876 aaKnown RBP13.5□□□□□ -0.25
PTPRF-205ENST00000414879 EXOC7Q9UPT5 735 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 ADAMTS13Q76LX8 1427 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 BSDC1Q9NW68 430 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-205ENST00000414879 FER1L4A9Z1Z3 1794 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 RGS12O14924 1447 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 TNNT1P13805 278 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 SNW1Q13573 536 aaKnown RBP13.5□□□□□ -0.25
PTPRF-205ENST00000414879 NT5C3AQ9H0P0 336 aa13.5□□□□□ -0.25
PTPRF-205ENST00000414879 ZMYM6O95789 1325 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 URI1O94763 535 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-205ENST00000414879 NPR1P16066 1061 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 SMTNP53814 917 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 LRRC24Q50LG9 513 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 KRT40Q6A162 431 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 DPY19L2Q6NUT2 758 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 ZKSCAN3Q9BRR0 538 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 USP17L12C9JPN9 530 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 USP17L21D6R901 530 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 LETM2Q2VYF4 491 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 MAPKAPK5Q8IW41 473 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 GPCPD1Q9NPB8 672 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 NARFQ9UHQ1 456 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 DBNLQ9UJU6 430 aaKnown RBP13.49□□□□□ -0.25
PTPRF-205ENST00000414879 KCNH3Q9ULD8 1083 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 PLS1Q14651 629 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 VWA3BQ502W6 1294 aa13.49□□□□□ -0.25
PTPRF-205ENST00000414879 GRAPQ13588 217 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 CNGA4Q8IV77 575 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 GRAPLQ8TC17 118 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-205ENST00000414879 MYO5BQ9ULV0 1848 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 NEFHP12036 1026 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 ARID4AP29374 1257 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-205ENST00000414879 REXO1Q8N1G1 1221 aaKnown RBP13.48□□□□□ -0.25
PTPRF-205ENST00000414879 CPLX3Q8WVH0 158 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 DHX36Q9H2U1 1008 aaKnown RBP13.48□□□□□ -0.25
PTPRF-205ENST00000414879 CLSTN2Q9H4D0 955 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 UQCRHLA0A096LP55 91 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 TUBBP07437 444 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 UQCRHP07919 91 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 AOPEPQ8N6M6 819 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 KDM3AQ9Y4C1 1321 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 PHACTR2O75167 634 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 GPATCH4Q5T3I0 446 aaKnown RBP13.48□□□□□ -0.25
PTPRF-205ENST00000414879 SLC5A4Q9NY91 659 aa13.48□□□□□ -0.25
PTPRF-205ENST00000414879 A0A0D9SFI3 127 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 FOSP01100 380 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-205ENST00000414879 GYG1P46976 350 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 MTA3Q9BTC8 594 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 JAG2Q9Y219 1238 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 IVNS1ABPQ9Y6Y0 642 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 GOLGA6L10A0A0M3HER8 536 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 BRD1O95696 1058 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 BCAMP50895 628 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 PTPN12Q05209 780 aaKnown RBP13.47□□□□□ -0.25
PTPRF-205ENST00000414879 CTDSPL2Q05D32 466 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 RTKN2Q8IZC4 609 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 VWA3AA6NCI4 1184 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 CCT6AP40227 531 aaKnown RBP13.47□□□□□ -0.25
PTPRF-205ENST00000414879 MCF2L2Q86YR7 1114 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 FANCBQ8NB91 859 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 NEK11Q8NG66 645 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 IWS1Q96ST2 819 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 DNAJC25Q9H1X3 360 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 CEP170BQ9Y4F5 1589 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-205ENST00000414879 ADCY9O60503 1353 aa13.47□□□□□ -0.25
PTPRF-205ENST00000414879 CGNQ9P2M7 1197 aaKnown RBP13.47□□□□□ -0.25
PTPRF-205ENST00000414879 MRPL11Q9Y3B7 192 aaKnown RBP13.47□□□□□ -0.25
PTPRF-205ENST00000414879 NRKQ7Z2Y5 1582 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.46□□□□□ -0.25
PTPRF-205ENST00000414879 FGAP02671 866 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 TRAPPC10P48553 1259 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms