RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 SCYL3Q8IZE3 742 aa17.56■□□□□ 0.4
LIMS1-206ENST00000414829 OSBP2Q969R2 916 aa17.56■□□□□ 0.4
LIMS1-206ENST00000414829 WNK4Q96J92 1243 aa17.56■□□□□ 0.4
LIMS1-206ENST00000414829 PUS7LQ9H0K6 701 aaKnown RBP17.56■□□□□ 0.4
LIMS1-206ENST00000414829 DCP1AQ9NPI6 582 aaPredicted RBP17.56■□□□□ 0.4
LIMS1-206ENST00000414829 HELLSQ9NRZ9 838 aa17.56■□□□□ 0.4
LIMS1-206ENST00000414829 ARPP21Q9UBL0 812 aaPredicted RBP17.56■□□□□ 0.4
LIMS1-206ENST00000414829 SAP30BPQ9UHR5 308 aaKnown RBP17.56■□□□□ 0.4
LIMS1-206ENST00000414829 SERPINB13Q9UIV8 391 aa17.56■□□□□ 0.4
LIMS1-206ENST00000414829 PALD1Q9ULE6 856 aa17.56■□□□□ 0.4
LIMS1-206ENST00000414829 SLC4A4Q9Y6R1 1079 aa17.56■□□□□ 0.4
LIMS1-206ENST00000414829 TTC22Q5TAA0 569 aa17.55■□□□□ 0.4
LIMS1-206ENST00000414829 SDR42E1Q8WUS8 393 aa17.55■□□□□ 0.4
LIMS1-206ENST00000414829 OPTNQ96CV9 577 aa17.55■□□□□ 0.4
LIMS1-206ENST00000414829 CLMNQ96JQ2 1002 aa17.55■□□□□ 0.4
LIMS1-206ENST00000414829 STRBPQ96SI9 672 aaKnown RBP17.55■□□□□ 0.4
LIMS1-206ENST00000414829 DIAPH3Q9NSV4 1193 aa17.55■□□□□ 0.4
LIMS1-206ENST00000414829 FZD1Q9UP38 647 aa17.55■□□□□ 0.4
LIMS1-206ENST00000414829 PDE4AP27815 886 aa17.54■□□□□ 0.4
LIMS1-206ENST00000414829 PPATQ06203 517 aa17.54■□□□□ 0.4
LIMS1-206ENST00000414829 PPIL2Q13356 520 aa17.54■□□□□ 0.4
LIMS1-206ENST00000414829 ELP3Q9H9T3 547 aa17.54■□□□□ 0.4
LIMS1-206ENST00000414829 PPP4R2Q9NY27 417 aa17.54■□□□□ 0.4
LIMS1-206ENST00000414829 SWAP70Q9UH65 585 aa17.54■□□□□ 0.4
LIMS1-206ENST00000414829 SNCAIPQ9Y6H5 919 aa17.54■□□□□ 0.4
LIMS1-206ENST00000414829 PHF20L1A8MW92 1017 aa17.53■□□□□ 0.4
LIMS1-206ENST00000414829 ASNSP08243 561 aa17.53■□□□□ 0.4
LIMS1-206ENST00000414829 GTF2A2P52657 109 aa17.53■□□□□ 0.4
LIMS1-206ENST00000414829 KIF23Q02241 960 aaPredicted RBP17.53■□□□□ 0.4
LIMS1-206ENST00000414829 OTUD7BQ6GQQ9 843 aa17.53■□□□□ 0.4
LIMS1-206ENST00000414829 OTUD5Q96G74 571 aa17.53■□□□□ 0.4
LIMS1-206ENST00000414829 ZNF287Q9HBT7 754 aa17.53■□□□□ 0.4
LIMS1-206ENST00000414829 AOC2O75106 756 aa17.52■□□□□ 0.4
LIMS1-206ENST00000414829 ALDH1A1P00352 501 aa17.52■□□□□ 0.4
LIMS1-206ENST00000414829 APPP05067 770 aa17.52■□□□□ 0.4
LIMS1-206ENST00000414829 INPP5BP32019 993 aa17.52■□□□□ 0.4
LIMS1-206ENST00000414829 TDO2P48775 406 aa17.52■□□□□ 0.4
LIMS1-206ENST00000414829 SNAPC2Q13487 334 aa17.52■□□□□ 0.4
LIMS1-206ENST00000414829 MCMDC2Q4G0Z9 681 aa17.52■□□□□ 0.4
LIMS1-206ENST00000414829 ZKSCAN4Q969J2 545 aaPredicted RBP17.52■□□□□ 0.4
LIMS1-206ENST00000414829 WBP1LQ9NX94 342 aa17.52■□□□□ 0.4
LIMS1-206ENST00000414829 SAGE1Q9NXZ1 904 aa17.52■□□□□ 0.4
LIMS1-206ENST00000414829 M0R2C6 588 aa17.51■□□□□ 0.39
LIMS1-206ENST00000414829 SDSP20132 328 aa17.51■□□□□ 0.39
LIMS1-206ENST00000414829 CAP2P40123 477 aa17.51■□□□□ 0.39
LIMS1-206ENST00000414829 SLFNL1Q499Z3 407 aa17.51■□□□□ 0.39
LIMS1-206ENST00000414829 RUFY2Q8WXA3 655 aa17.51■□□□□ 0.39
LIMS1-206ENST00000414829 AS3MTQ9HBK9 375 aa17.51■□□□□ 0.39
LIMS1-206ENST00000414829 RAD50Q92878 1312 aa17.5■□□□□ 0.39
LIMS1-206ENST00000414829 MYO5AQ9Y4I1 1855 aaKnown RBP17.5■□□□□ 0.39
LIMS1-206ENST00000414829 PATL2C9JE40 543 aaKnown RBP17.5■□□□□ 0.39
LIMS1-206ENST00000414829 PRKAB2O43741 272 aa17.5■□□□□ 0.39
LIMS1-206ENST00000414829 CHGBP05060 677 aa17.5■□□□□ 0.39
LIMS1-206ENST00000414829 SLC3A2P08195 630 aaKnown RBP17.5■□□□□ 0.39
LIMS1-206ENST00000414829 HSPA1AP0DMV8 641 aaKnown RBP17.5■□□□□ 0.39
LIMS1-206ENST00000414829 HSPA1BP0DMV9 641 aaKnown RBP17.5■□□□□ 0.39
LIMS1-206ENST00000414829 CETPP11597 493 aa17.5■□□□□ 0.39
LIMS1-206ENST00000414829 SBK1Q52WX2 424 aa17.5■□□□□ 0.39
LIMS1-206ENST00000414829 NAPBQ9H115 298 aa17.5■□□□□ 0.39
LIMS1-206ENST00000414829 MYH7P12883 1935 aa17.5■□□□□ 0.39
LIMS1-206ENST00000414829 FOCADQ5VW36 1801 aa17.49■□□□□ 0.39
LIMS1-206ENST00000414829 GSG1L2A8MUP6 293 aa17.49■□□□□ 0.39
LIMS1-206ENST00000414829 USP17L12C9JPN9 530 aa17.49■□□□□ 0.39
LIMS1-206ENST00000414829 USP17L21D6R901 530 aa17.49■□□□□ 0.39
LIMS1-206ENST00000414829 CXCL11O14625 94 aa17.49■□□□□ 0.39
LIMS1-206ENST00000414829 GSPT1P15170 499 aaKnown RBP17.49■□□□□ 0.39
LIMS1-206ENST00000414829 PTPRAP18433 802 aa17.49■□□□□ 0.39
LIMS1-206ENST00000414829 TM4SF4P48230 202 aa17.49■□□□□ 0.39
LIMS1-206ENST00000414829 GABPAQ06546 454 aa17.49■□□□□ 0.39
LIMS1-206ENST00000414829 C12orf60Q5U649 245 aa17.49■□□□□ 0.39
LIMS1-206ENST00000414829 ZCCHC17Q9NP64 241 aaKnown RBP17.49■□□□□ 0.39
LIMS1-206ENST00000414829 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.49■□□□□ 0.39
LIMS1-206ENST00000414829 DDX60LQ5H9U9 1706 aaKnown RBP17.49■□□□□ 0.39
LIMS1-206ENST00000414829 CCDC171Q6TFL3 1326 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 FAM196BA6NMK8 535 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 CTCFP49711 727 aaPredicted RBP17.48■□□□□ 0.39
LIMS1-206ENST00000414829 PLCD1P51178 756 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 MKRN3Q13064 507 aaKnown RBP17.48■□□□□ 0.39
LIMS1-206ENST00000414829 NMIQ13287 307 aaPredicted RBP17.48■□□□□ 0.39
LIMS1-206ENST00000414829 SLC4A8Q2Y0W8 1093 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 TATDN1Q6P1N9 297 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 CCDC17Q96LX7 622 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 DNAJC18Q9H819 358 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 CABP5Q9NP86 173 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 KCNH4Q9UQ05 1017 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 ROBO3Q96MS0 1386 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 NAV1Q8NEY1 1877 aa17.48■□□□□ 0.39
LIMS1-206ENST00000414829 ZMYM6O95789 1325 aa17.47■□□□□ 0.39
LIMS1-206ENST00000414829 A0A0D9SFI3 127 aa17.47■□□□□ 0.39
LIMS1-206ENST00000414829 TESPA1A2RU30 521 aaPredicted RBP17.47■□□□□ 0.39
LIMS1-206ENST00000414829 USP17L5A8MUK1 530 aa17.47■□□□□ 0.39
LIMS1-206ENST00000414829 IRF6O14896 467 aa17.47■□□□□ 0.39
LIMS1-206ENST00000414829 CERKLQ49MI3 558 aaPredicted RBP17.47■□□□□ 0.39
LIMS1-206ENST00000414829 BMP2KLQ5H9B9 411 aa17.47■□□□□ 0.39
LIMS1-206ENST00000414829 CTR9Q6PD62 1173 aa17.47■□□□□ 0.39
LIMS1-206ENST00000414829 C16orf86Q6ZW13 317 aa17.47■□□□□ 0.39
LIMS1-206ENST00000414829 FAM227BQ96M60 508 aa17.47■□□□□ 0.39
LIMS1-206ENST00000414829 ZBTB21Q9ULJ3 1066 aa17.47■□□□□ 0.39
LIMS1-206ENST00000414829 ZHX2Q9Y6X8 837 aa17.47■□□□□ 0.39
LIMS1-206ENST00000414829 OTOFQ9HC10 1997 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms