RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 MTMR10Q9NXD2 777 aa11.91□□□□□ -0.5
RFFL-203ENST00000413582 GJD2Q9UKL4 321 aa11.91□□□□□ -0.5
RFFL-203ENST00000413582 PFASO15067 1338 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 RPTORQ8N122 1335 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 COL2A1P02458 1487 aaPredicted RBP11.9□□□□□ -0.5
RFFL-203ENST00000413582 FAM196BA6NMK8 535 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 CCER2I3L3R5 266 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 ADORA1P30542 326 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 BTDP43251 543 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 GCLCP48506 637 aaPredicted RBP11.9□□□□□ -0.5
RFFL-203ENST00000413582 RASGRF1Q13972 1273 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 DZIP1Q86YF9 867 aaKnown RBP11.9□□□□□ -0.5
RFFL-203ENST00000413582 MIER1Q8N108 512 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 ZGPATQ8N5A5 531 aaKnown RBP11.9□□□□□ -0.5
RFFL-203ENST00000413582 TRIB2Q92519 343 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 FAM163AQ96GL9 167 aaPredicted RBP11.9□□□□□ -0.5
RFFL-203ENST00000413582 C11orf49Q9H6J7 331 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 HMX1Q9NP08 348 aaPredicted RBP11.9□□□□□ -0.5
RFFL-203ENST00000413582 FBXO3Q9UK99 471 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 SIPA1L1O43166 1804 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 FRMPD3Q5JV73 1810 aa11.9□□□□□ -0.5
RFFL-203ENST00000413582 MROH7-TTC4A0A0A0MT08 1334 aa11.89□□□□□ -0.51
RFFL-203ENST00000413582 PDS5AQ29RF7 1337 aaKnown RBP11.89□□□□□ -0.51
RFFL-203ENST00000413582 ZNF521Q96K83 1311 aa11.89□□□□□ -0.51
RFFL-203ENST00000413582 LAMA2P24043 3122 aaKnown RBP11.89□□□□□ -0.51
RFFL-203ENST00000413582 TBC1D12O60347 775 aa11.89□□□□□ -0.51
RFFL-203ENST00000413582 RHBDL3P58872 404 aa11.89□□□□□ -0.51
RFFL-203ENST00000413582 MAP3K21Q5TCX8 1036 aa11.89□□□□□ -0.51
RFFL-203ENST00000413582 CCDC102BQ68D86 513 aa11.89□□□□□ -0.51
RFFL-203ENST00000413582 ASCC2Q9H1I8 757 aaPredicted RBP11.89□□□□□ -0.51
RFFL-203ENST00000413582 CEP126Q9P2H0 1117 aa11.89□□□□□ -0.51
RFFL-203ENST00000413582 OGDHLQ9ULD0 1010 aa11.89□□□□□ -0.51
RFFL-203ENST00000413582 MAST2Q6P0Q8 1798 aa11.89□□□□□ -0.51
RFFL-203ENST00000413582 HMGCS2P54868 508 aa11.88□□□□□ -0.51
RFFL-203ENST00000413582 SPP2Q13103 211 aa11.88□□□□□ -0.51
RFFL-203ENST00000413582 SLF2Q8IX21 1173 aa11.88□□□□□ -0.51
RFFL-203ENST00000413582 ZNF280CQ8ND82 737 aa11.88□□□□□ -0.51
RFFL-203ENST00000413582 ZNF384Q8TF68 577 aa11.88□□□□□ -0.51
RFFL-203ENST00000413582 SSH1Q8WYL5 1049 aa11.88□□□□□ -0.51
RFFL-203ENST00000413582 UBE2OQ9C0C9 1292 aaKnown RBP11.88□□□□□ -0.51
RFFL-203ENST00000413582 OSBPL5Q9H0X9 879 aaPredicted RBP11.88□□□□□ -0.51
RFFL-203ENST00000413582 MORF4L1Q9UBU8 362 aa11.88□□□□□ -0.51
RFFL-203ENST00000413582 ABCF2Q9UG63 623 aa11.88□□□□□ -0.51
RFFL-203ENST00000413582 GPR75-ASB3A0A0A6YYF3 556 aa11.87□□□□□ -0.51
RFFL-203ENST00000413582 COL6A1P12109 1028 aa11.87□□□□□ -0.51
RFFL-203ENST00000413582 PRKAR2AP13861 404 aaKnown RBP11.87□□□□□ -0.51
RFFL-203ENST00000413582 IL15P40933 162 aaPredicted RBP11.87□□□□□ -0.51
RFFL-203ENST00000413582 PABPC4Q13310 644 aaKnown RBP eCLIP11.87□□□□□ -0.51
RFFL-203ENST00000413582 RRP1BQ14684 758 aaKnown RBP11.87□□□□□ -0.51
RFFL-203ENST00000413582 SH3D19Q5HYK7 790 aa11.87□□□□□ -0.51
RFFL-203ENST00000413582 COL25A1Q9BXS0 654 aaPredicted RBP11.87□□□□□ -0.51
RFFL-203ENST00000413582 TBC1D2Q9BYX2 928 aa11.87□□□□□ -0.51
RFFL-203ENST00000413582 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.87□□□□□ -0.51
RFFL-203ENST00000413582 TTC28Q96AY4 2481 aa11.86□□□□□ -0.51
RFFL-203ENST00000413582 MECOMQ03112 1051 aa11.86□□□□□ -0.51
RFFL-203ENST00000413582 SOCS4Q8WXH5 440 aa11.86□□□□□ -0.51
RFFL-203ENST00000413582 PA2G4Q9UQ80 394 aaKnown RBP11.86□□□□□ -0.51
RFFL-203ENST00000413582 CDK5RAP2Q96SN8 1893 aa11.86□□□□□ -0.51
RFFL-203ENST00000413582 VCANP13611 3396 aa11.85□□□□□ -0.51
RFFL-203ENST00000413582 DNAH12Q6ZR08 3092 aa11.85□□□□□ -0.51
RFFL-203ENST00000413582 USP17L5A8MUK1 530 aa11.85□□□□□ -0.51
RFFL-203ENST00000413582 UBTFL1P0CB47 393 aaPredicted RBP11.85□□□□□ -0.51
RFFL-203ENST00000413582 XRCC5P13010 732 aaKnown RBP11.85□□□□□ -0.51
RFFL-203ENST00000413582 CYP2B6P20813 491 aa11.85□□□□□ -0.51
RFFL-203ENST00000413582 CAP2P40123 477 aa11.85□□□□□ -0.51
RFFL-203ENST00000413582 SPTY2D1Q68D10 685 aaPredicted RBP11.85□□□□□ -0.51
RFFL-203ENST00000413582 TXNRD2Q9NNW7 524 aa11.85□□□□□ -0.51
RFFL-203ENST00000413582 COPRSQ9NQ92 184 aa11.85□□□□□ -0.51
RFFL-203ENST00000413582 FOCADQ5VW36 1801 aa11.85□□□□□ -0.51
RFFL-203ENST00000413582 EYSQ5T1H1 3165 aa11.84□□□□□ -0.51
RFFL-203ENST00000413582 LTBP2Q14767 1821 aa11.84□□□□□ -0.51
RFFL-203ENST00000413582 PEX10O60683 326 aa11.84□□□□□ -0.51
RFFL-203ENST00000413582 MYCNP04198 464 aaPredicted RBP11.84□□□□□ -0.51
RFFL-203ENST00000413582 ATXN8OSP0DMR3 200 aa11.84□□□□□ -0.51
RFFL-203ENST00000413582 IRX3P78415 501 aaPredicted RBP11.84□□□□□ -0.51
RFFL-203ENST00000413582 MTMR2Q13614 643 aa11.84□□□□□ -0.51
RFFL-203ENST00000413582 LRRC26Q2I0M4 334 aa11.84□□□□□ -0.51
RFFL-203ENST00000413582 ERICH6Q7L0X2 663 aa11.84□□□□□ -0.51
RFFL-203ENST00000413582 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.84□□□□□ -0.51
RFFL-203ENST00000413582 GUCD1Q96NT3 240 aa11.84□□□□□ -0.51
RFFL-203ENST00000413582 NUDT12Q9BQG2 462 aa11.84□□□□□ -0.51
RFFL-203ENST00000413582 A0A1B0GUL7 405 aa11.83□□□□□ -0.52
RFFL-203ENST00000413582 POTEB2H3BUK9 544 aa11.83□□□□□ -0.52
RFFL-203ENST00000413582 MAP4K4O95819 1239 aaPredicted RBP11.83□□□□□ -0.52
RFFL-203ENST00000413582 ZKSCAN1P17029 563 aaPredicted RBP11.83□□□□□ -0.52
RFFL-203ENST00000413582 HOXA7P31268 230 aaPredicted RBP11.83□□□□□ -0.52
RFFL-203ENST00000413582 TIMM10P62072 90 aa11.83□□□□□ -0.52
RFFL-203ENST00000413582 HERVK_113P62684 666 aa11.83□□□□□ -0.52
RFFL-203ENST00000413582 MDM2Q00987 491 aaPredicted RBP11.83□□□□□ -0.52
RFFL-203ENST00000413582 CACNB2Q08289 660 aaPredicted RBP11.83□□□□□ -0.52
RFFL-203ENST00000413582 FAM109BQ6ICB4 259 aaPredicted RBP11.83□□□□□ -0.52
RFFL-203ENST00000413582 PI16Q6UXB8 463 aa11.83□□□□□ -0.52
RFFL-203ENST00000413582 USP6NLQ92738 828 aa11.83□□□□□ -0.52
RFFL-203ENST00000413582 P2RX7Q99572 595 aaKnown RBP11.83□□□□□ -0.52
RFFL-203ENST00000413582 WDR18Q9BV38 432 aa11.83□□□□□ -0.52
RFFL-203ENST00000413582 AS3MTQ9HBK9 375 aa11.83□□□□□ -0.52
RFFL-203ENST00000413582 HERC5Q9UII4 1024 aaKnown RBP11.83□□□□□ -0.52
RFFL-203ENST00000413582 PRUNE2Q8WUY3 3088 aa11.83□□□□□ -0.52
RFFL-203ENST00000413582 CCND3P30281 292 aaPredicted RBP11.82□□□□□ -0.52
RFFL-203ENST00000413582 BACE1P56817 501 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms