RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 INPP5FQ9Y2H2 1132 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 PIK3C2BO00750 1634 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 LINC01387J3KSC0 135 aa9.12□□□□□ -0.95
USP40-202ENST00000409945 OIP5O43482 229 aa9.12□□□□□ -0.95
USP40-202ENST00000409945 MED14O60244 1454 aa9.12□□□□□ -0.95
USP40-202ENST00000409945 PF4P02776 101 aa9.12□□□□□ -0.95
USP40-202ENST00000409945 FBXO27Q8NI29 283 aa9.12□□□□□ -0.95
USP40-202ENST00000409945 SLC16A10Q8TF71 515 aa9.12□□□□□ -0.95
USP40-202ENST00000409945 SLC7A3Q8WY07 619 aa9.12□□□□□ -0.95
USP40-202ENST00000409945 EAF1Q96JC9 268 aaPredicted RBP9.12□□□□□ -0.95
USP40-202ENST00000409945 RSRP1Q9BUV0 290 aa9.12□□□□□ -0.95
USP40-202ENST00000409945 TMEM39AQ9NV64 488 aa9.12□□□□□ -0.95
USP40-202ENST00000409945 TMEM2Q9UHN6 1383 aa9.12□□□□□ -0.95
USP40-202ENST00000409945 ADGRB3O60242 1522 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 SLIT1O75093 1534 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 SV2BQ7L1I2 683 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 BTBD6Q96KE9 485 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 UBP1Q9NZI7 540 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 PPP1R1BQ9UD71 204 aaPredicted RBP9.11□□□□□ -0.95
USP40-202ENST00000409945 IQGAP1P46940 1657 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 SYNMO15061 1565 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 IQSEC2Q5JU85 1478 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 CTSBP07858 339 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 DNAJA1P31689 397 aaKnown RBP9.11□□□□□ -0.95
USP40-202ENST00000409945 BNC2Q6ZN30 1099 aaPredicted RBP9.11□□□□□ -0.95
USP40-202ENST00000409945 NRSN2Q9GZP1 204 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 E9PCH4 1651 aa9.11□□□□□ -0.95
USP40-202ENST00000409945 CELA2BP08218 269 aaPredicted RBP9.1□□□□□ -0.95
USP40-202ENST00000409945 CDC27P30260 824 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 EIF4A3P38919 411 aaKnown RBP9.1□□□□□ -0.95
USP40-202ENST00000409945 GJA8P48165 433 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 CDK8P49336 464 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 SEPT6Q14141 434 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 IKBKEQ14164 716 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 KANK3Q6NY19 840 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 AGMOQ6ZNB7 445 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 PDZD3Q86UT5 571 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 GALNT11Q8NCW6 608 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 ZNF296Q8WUU4 475 aaPredicted RBP9.1□□□□□ -0.95
USP40-202ENST00000409945 ZC3H12CQ9C0D7 883 aaKnown RBP9.1□□□□□ -0.95
USP40-202ENST00000409945 CPS1P31327 1500 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 ARHGAP23Q9P227 1491 aa9.1□□□□□ -0.95
USP40-202ENST00000409945 ZNF335Q9H4Z2 1342 aaPredicted RBP9.09□□□□□ -0.95
USP40-202ENST00000409945 SELPP16109 830 aa9.09□□□□□ -0.95
USP40-202ENST00000409945 ALAS2P22557 587 aa9.09□□□□□ -0.95
USP40-202ENST00000409945 CAMK2GQ13555 558 aaPredicted RBP9.09□□□□□ -0.95
USP40-202ENST00000409945 RPS26P11Q5JNZ5 115 aaPredicted RBP9.09□□□□□ -0.95
USP40-202ENST00000409945 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.09□□□□□ -0.95
USP40-202ENST00000409945 SREK1Q8WXA9 508 aaKnown RBP9.09□□□□□ -0.95
USP40-202ENST00000409945 SPON2Q9BUD6 331 aa9.09□□□□□ -0.95
USP40-202ENST00000409945 NEURL4Q96JN8 1562 aa9.09□□□□□ -0.95
USP40-202ENST00000409945 NID1P14543 1247 aa9.09□□□□□ -0.95
USP40-202ENST00000409945 ILDR2Q71H61 639 aa9.09□□□□□ -0.95
USP40-202ENST00000409945 GOLM1Q8NBJ4 401 aa9.09□□□□□ -0.95
USP40-202ENST00000409945 TTC9Q92623 222 aa9.09□□□□□ -0.95
USP40-202ENST00000409945 SPHKAPQ2M3C7 1700 aa9.08□□□□□ -0.96
USP40-202ENST00000409945 H3BRJ5 948 aa9.08□□□□□ -0.96
USP40-202ENST00000409945 DDX3YO15523 660 aaKnown RBP9.08□□□□□ -0.96
USP40-202ENST00000409945 LILRB5O75023 590 aa9.08□□□□□ -0.96
USP40-202ENST00000409945 SULF2Q8IWU5 870 aa9.08□□□□□ -0.96
USP40-202ENST00000409945 GAL3ST3Q96A11 431 aa9.08□□□□□ -0.96
USP40-202ENST00000409945 CEP44Q9C0F1 390 aa9.08□□□□□ -0.96
USP40-202ENST00000409945 SETD5Q9C0A6 1442 aa9.08□□□□□ -0.96
USP40-202ENST00000409945 DEAF1O75398 565 aaPredicted RBP9.07□□□□□ -0.96
USP40-202ENST00000409945 DLGAP3O95886 979 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 F13A1P00488 732 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 SETDB1Q15047 1291 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 KLHDC7BQ96G42 594 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 KCNQ5Q9NR82 932 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 LTBP4Q8N2S1 1624 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 ADAM11O75078 769 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 WFS1O76024 890 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 BCRP11274 1271 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 LTKP29376 864 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 DGKGP49619 791 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 SNRPNP63162 240 aaKnown RBP9.07□□□□□ -0.96
USP40-202ENST00000409945 MCF2L2Q86YR7 1114 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 RELL1Q8IUW5 271 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 KIAA0825Q8IV33 1275 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 DMRTC2Q8IXT2 367 aaPredicted RBP9.07□□□□□ -0.96
USP40-202ENST00000409945 DHX38Q92620 1227 aaKnown RBP9.07□□□□□ -0.96
USP40-202ENST00000409945 KCNK4Q9NYG8 393 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 PRKAG2Q9UGJ0 569 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 PPME1Q9Y570 386 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 RIMS2Q9UQ26 1411 aa9.07□□□□□ -0.96
USP40-202ENST00000409945 GREM1O60565 184 aa9.06□□□□□ -0.96
USP40-202ENST00000409945 TOM1O60784 492 aa9.06□□□□□ -0.96
USP40-202ENST00000409945 ZNF252P-AS1Q0IIN9 211 aa9.06□□□□□ -0.96
USP40-202ENST00000409945 ZNF385CQ66K41 422 aaPredicted RBP9.06□□□□□ -0.96
USP40-202ENST00000409945 GPRASP2Q96D09 838 aa9.06□□□□□ -0.96
USP40-202ENST00000409945 TANGO6Q9C0B7 1094 aa9.06□□□□□ -0.96
USP40-202ENST00000409945 TLR3O15455 904 aaKnown RBP9.05□□□□□ -0.96
USP40-202ENST00000409945 GSTM4Q03013 218 aa9.05□□□□□ -0.96
USP40-202ENST00000409945 MSL1Q68DK7 614 aa9.05□□□□□ -0.96
USP40-202ENST00000409945 JARID2Q92833 1246 aaPredicted RBP9.05□□□□□ -0.96
USP40-202ENST00000409945 WDR89Q96FK6 387 aaPredicted RBP9.05□□□□□ -0.96
USP40-202ENST00000409945 TMEM131LA2VDJ0 1609 aa9.05□□□□□ -0.96
USP40-202ENST00000409945 TRPM2O94759 1503 aa9.05□□□□□ -0.96
USP40-202ENST00000409945 FSCN2O14926 492 aa9.05□□□□□ -0.96
USP40-202ENST00000409945 FGRP09769 529 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms