RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 NSRP1Q9H0G5 558 aaKnown RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 DBF4Q9UBU7 674 aaPredicted RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 ERVK-7P63135 1459 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 EIF4A2Q14240 407 aaKnown RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 GRAMD4Q6IC98 578 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 DDX54Q8TDD1 881 aaKnown RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 BOLA2Q9H3K6 86 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 RHBDL2Q9NX52 303 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 ABCA8O94911 1581 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 ATP10AO60312 1499 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 BIN1O00499 593 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 N4BP1O75113 896 aaKnown RBP13.15□□□□□ -0.3
NPHP4-202ENST00000378161 ATF3P18847 181 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 GET4Q7L5D6 327 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-202ENST00000378161 FCHSD1Q86WN1 690 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 PROSER2Q86WR7 435 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-202ENST00000378161 FGD4Q96M96 766 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 CYB5D1Q6P9G0 228 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 PPFIBP2Q8ND30 876 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 HAUS1Q96CS2 278 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 RAB27AP51159 221 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 CCDC178Q5BJE1 867 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 SPTY2D1Q68D10 685 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-202ENST00000378161 KAT2BQ92831 832 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 DHX58Q96C10 678 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 FAM81BQ96LP2 452 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 XPO4Q9C0E2 1151 aaKnown RBP13.15□□□□□ -0.3
NPHP4-202ENST00000378161 KAT14Q9H8E8 782 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 SAMD15Q9P1V8 674 aa13.15□□□□□ -0.3
NPHP4-202ENST00000378161 NPATQ14207 1427 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 PPIP5K1Q6PFW1 1433 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 ACEP12821 1306 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 SLC3A2P08195 630 aaKnown RBP13.14□□□□□ -0.31
NPHP4-202ENST00000378161 HPDP32754 393 aaPredicted RBP13.14□□□□□ -0.31
NPHP4-202ENST00000378161 PAFAH1B1P43034 410 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 BRAPQ7Z569 592 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 APLFQ8IW19 511 aaPredicted RBP13.14□□□□□ -0.31
NPHP4-202ENST00000378161 LUC7LQ9NQ29 371 aaKnown RBP13.14□□□□□ -0.31
NPHP4-202ENST00000378161 ATP7AQ04656 1500 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 hCG_2014768A0A024R1R8 64 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 EIF3HO15372 352 aaKnown RBP eCLIP13.14□□□□□ -0.31
NPHP4-202ENST00000378161 CHMLP26374 656 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 GKAP1Q5VSY0 366 aaPredicted RBP13.14□□□□□ -0.31
NPHP4-202ENST00000378161 LARP1Q6PKG0 1096 aaKnown RBP13.14□□□□□ -0.31
NPHP4-202ENST00000378161 USP6NLQ92738 828 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 EME2A4GXA9 379 aaPredicted RBP13.14□□□□□ -0.31
NPHP4-202ENST00000378161 IPO5O00410 1097 aaKnown RBP13.14□□□□□ -0.31
NPHP4-202ENST00000378161 SLC44A4Q53GD3 710 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 ZNF280DQ6N043 979 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 CCDC129Q6ZRS4 1044 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 DACH1Q9UI36 760 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 NUB1Q9Y5A7 615 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 ABCC1P33527 1531 aa13.14□□□□□ -0.31
NPHP4-202ENST00000378161 TTC37Q6PGP7 1564 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 FLOT1O75955 427 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 TATP17735 454 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-202ENST00000378161 KRT24Q2M2I5 525 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 SARM1Q6SZW1 724 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 DAAM1Q9Y4D1 1078 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 SAMD9LQ8IVG5 1584 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 PI4KAP2A4QPH2 592 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 TMCC1O94876 653 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 PDCLQ13371 301 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 CWF19L1Q69YN2 538 aaKnown RBP13.13□□□□□ -0.31
NPHP4-202ENST00000378161 SPATA24Q86W54 205 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 PI4KAP1Q8N8J0 262 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 KCNH5Q8NCM2 988 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 CPLX3Q8WVH0 158 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 JAKMIP2Q96AA8 810 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 LZTS2Q9BRK4 669 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 ZFATQ9P243 1243 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 YTHDC2Q9H6S0 1430 aaKnown RBP13.13□□□□□ -0.31
NPHP4-202ENST00000378161 FSBPO95073 299 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 VIL1P09327 827 aaKnown RBP13.13□□□□□ -0.31
NPHP4-202ENST00000378161 MYL6BP14649 208 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 XBP1P17861 261 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 VAV2P52735 878 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 MUM1Q2TAK8 710 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 OTUD7AQ8TE49 926 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-202ENST00000378161 TATDN2Q93075 761 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 IL17RAQ96F46 866 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 CCDC8Q9H0W5 538 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-202ENST00000378161 TBC1D2BQ9UPU7 963 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 KIF24Q5T7B8 1368 aa13.13□□□□□ -0.31
NPHP4-202ENST00000378161 PYGBP11216 843 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 ANKLE2Q86XL3 938 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 WDR75Q8IWA0 830 aaKnown RBP13.12□□□□□ -0.31
NPHP4-202ENST00000378161 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.12□□□□□ -0.31
NPHP4-202ENST00000378161 HNRNPLLQ8WVV9 542 aaKnown RBP13.12□□□□□ -0.31
NPHP4-202ENST00000378161 KCNB2Q92953 911 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 GORASP1Q9BQQ3 440 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 HMG20BQ9P0W2 317 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 LARSQ9P2J5 1176 aaKnown RBP13.12□□□□□ -0.31
NPHP4-202ENST00000378161 U3KPZ7 1027 aaPredicted RBP13.12□□□□□ -0.31
NPHP4-202ENST00000378161 IL13P35225 146 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 HAUS2Q9NVX0 235 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 PLXNC1O60486 1568 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 ABCC4O15439 1325 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 EIF4E1BA6NMX2 242 aaKnown RBP13.12□□□□□ -0.31
NPHP4-202ENST00000378161 DIAPH2O60879 1101 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms