RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 NEMFO60524 1076 aa16.52■□□□□ 0.24
TCOF1-202ENST00000377797 EXOC1Q9NV70 894 aa16.52■□□□□ 0.24
TCOF1-202ENST00000377797 PPEF1O14829 653 aaPredicted RBP16.52■□□□□ 0.23
TCOF1-202ENST00000377797 SYCP1Q15431 976 aa16.52■□□□□ 0.23
TCOF1-202ENST00000377797 CNKSR1Q969H4 720 aa16.52■□□□□ 0.23
TCOF1-202ENST00000377797 TRIM47Q96LD4 638 aa16.52■□□□□ 0.23
TCOF1-202ENST00000377797 PXDNQ92626 1479 aa16.52■□□□□ 0.23
TCOF1-202ENST00000377797 CLSTN2Q9H4D0 955 aa16.52■□□□□ 0.23
TCOF1-202ENST00000377797 KCNH3Q9ULD8 1083 aa16.52■□□□□ 0.23
TCOF1-202ENST00000377797 RIPOR2Q9Y4F9 1068 aa16.52■□□□□ 0.23
TCOF1-202ENST00000377797 ADGRB2O60241 1585 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 IFT172Q9UG01 1749 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 N4BP3O15049 544 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 PPP1R12BO60237 982 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-202ENST00000377797 SPECC1Q5M775 1068 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 STRBPQ96SI9 672 aaKnown RBP16.51■□□□□ 0.23
TCOF1-202ENST00000377797 SAMM50Q9Y512 469 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 MRPL12P52815 198 aaKnown RBP16.51■□□□□ 0.23
TCOF1-202ENST00000377797 FBXO18Q8NFZ0 1043 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 GJA3Q9Y6H8 435 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 SPATA31A5Q5VU36 1347 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 SPATA31A7Q8IWB4 1347 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 ASIC1P78348 528 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 SCARF1Q14162 830 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 TICAM2Q86XR7 235 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 NSUN7Q8NE18 718 aaKnown RBP16.51■□□□□ 0.23
TCOF1-202ENST00000377797 ZNF397Q8NF99 534 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-202ENST00000377797 CERKQ8TCT0 537 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 YEATS4O95619 227 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 PNMA1Q8ND90 353 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 ERMNQ8TAM6 284 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 PLIN2Q99541 437 aa16.51■□□□□ 0.23
TCOF1-202ENST00000377797 NUP88Q99567 741 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-202ENST00000377797 C3P01024 1663 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 KRT79Q5XKE5 535 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 PLA2G12BQ9BX93 195 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 LRRC27Q9C0I9 530 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 UTYO14607 1347 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 TTC38Q5R3I4 469 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 TTC12Q9H892 705 aaPredicted RBP16.5■□□□□ 0.23
TCOF1-202ENST00000377797 ZNF34Q8IZ26 560 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 CUTAO60888 179 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 MMP10P09238 476 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 SLC1A4P43007 532 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 ITPK1Q13572 414 aa16.5■□□□□ 0.23
TCOF1-202ENST00000377797 C16orf45Q96MC5 204 aaPredicted RBP16.5■□□□□ 0.23
TCOF1-202ENST00000377797 BARGINQ6ZT62 677 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 CACNA2D4Q7Z3S7 1137 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 TMC4Q7Z404 712 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 KIF2CQ99661 725 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 GPHNQ9NQX3 736 aaPredicted RBP16.49■□□□□ 0.23
TCOF1-202ENST00000377797 ZSCAN12O43309 604 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 ZNF202O95125 648 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 ARID4AP29374 1257 aaPredicted RBP16.49■□□□□ 0.23
TCOF1-202ENST00000377797 DIXDC1Q155Q3 683 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 ZSWIM5Q9P217 1185 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 LIG1P18858 919 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 DLGAP5Q15398 846 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 JAKMIP3Q5VZ66 844 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 KAZALD1Q96I82 304 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 GPR101Q96P66 508 aaPredicted RBP16.49■□□□□ 0.23
TCOF1-202ENST00000377797 KDM6AO15550 1401 aaPredicted RBP16.49■□□□□ 0.23
TCOF1-202ENST00000377797 USP42Q9H9J4 1324 aaKnown RBP16.49■□□□□ 0.23
TCOF1-202ENST00000377797 UQCRHLA0A096LP55 91 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 UQCRHP07919 91 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 PCP11498 1178 aaKnown RBP16.49■□□□□ 0.23
TCOF1-202ENST00000377797 STX17P56962 302 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 KIAA1328Q86T90 577 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 PDCL3Q9H2J4 239 aa16.49■□□□□ 0.23
TCOF1-202ENST00000377797 BTBD18B2RXH4 712 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 POLR2DO15514 142 aaKnown RBP16.48■□□□□ 0.23
TCOF1-202ENST00000377797 ADRA2BP18089 450 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 HSPA1LP34931 641 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 PSMA7O14818 248 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 CAMTA2O94983 1202 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 RFX5P48382 616 aaPredicted RBP16.48■□□□□ 0.23
TCOF1-202ENST00000377797 CCDC40Q4G0X9 1142 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 GPT2Q8TD30 523 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 CYP2D7A0A087X1C5 515 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 CSF1RP07333 972 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 MECOMQ03112 1051 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 ZFYVE27Q5T4F4 411 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 NIM1KQ8IY84 436 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 SPATA31A6Q5VVP1 1343 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 LZTS2Q9BRK4 669 aa16.48■□□□□ 0.23
TCOF1-202ENST00000377797 KIF2AO00139 706 aaPredicted RBP16.47■□□□□ 0.23
TCOF1-202ENST00000377797 RBM10P98175 930 aaKnown RBP16.47■□□□□ 0.23
TCOF1-202ENST00000377797 NOSTRINQ8IVI9 506 aa16.47■□□□□ 0.23
TCOF1-202ENST00000377797 ZYXQ15942 572 aaKnown RBP16.47■□□□□ 0.23
TCOF1-202ENST00000377797 TNNT1P13805 278 aa16.47■□□□□ 0.23
TCOF1-202ENST00000377797 NFIXQ14938 502 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 ADALQ6DHV7 355 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 KIF18AQ8NI77 898 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 PRDX5P30044 214 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 SPAG1Q07617 926 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 ODF2Q5BJF6 829 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 TCERG1LQ5VWI1 586 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 TXLNBQ8N3L3 684 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 DBNDD1Q9H9R9 158 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms