RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 DDX11Q96FC9 970 aa18.18■□□□□ 0.5
CCDC40-202ENST00000374876 WNT10BO00744 389 aa18.18■□□□□ 0.5
CCDC40-202ENST00000374876 APOBRQ0VD83 1088 aa18.18■□□□□ 0.5
CCDC40-202ENST00000374876 DIXDC1Q155Q3 683 aa18.18■□□□□ 0.5
CCDC40-202ENST00000374876 LDHDQ86WU2 507 aa18.18■□□□□ 0.5
CCDC40-202ENST00000374876 SPATA32Q96LK8 384 aa18.18■□□□□ 0.5
CCDC40-202ENST00000374876 SCAF8Q9UPN6 1271 aaKnown RBP18.18■□□□□ 0.5
CCDC40-202ENST00000374876 GOLGA6L4A6NEF3 574 aa18.17■□□□□ 0.5
CCDC40-202ENST00000374876 CRKP46108 304 aa18.17■□□□□ 0.5
CCDC40-202ENST00000374876 DLGAP5Q15398 846 aa18.17■□□□□ 0.5
CCDC40-202ENST00000374876 GIMAP6Q6P9H5 292 aa18.17■□□□□ 0.5
CCDC40-202ENST00000374876 SMARCC2Q8TAQ2 1214 aa18.17■□□□□ 0.5
CCDC40-202ENST00000374876 PRMT6Q96LA8 375 aaPredicted RBP18.17■□□□□ 0.5
CCDC40-202ENST00000374876 AGXT2Q9BYV1 514 aa18.17■□□□□ 0.5
CCDC40-202ENST00000374876 SUGT1Q9Y2Z0 365 aa18.17■□□□□ 0.5
CCDC40-202ENST00000374876 APPBP2Q92624 585 aa18.16■□□□□ 0.5
CCDC40-202ENST00000374876 PIH1D3Q9NQM4 214 aaKnown RBP18.16■□□□□ 0.5
CCDC40-202ENST00000374876 LRP2BPQ9P2M1 347 aa18.16■□□□□ 0.5
CCDC40-202ENST00000374876 TFIP11Q9UBB9 837 aaKnown RBP18.16■□□□□ 0.5
CCDC40-202ENST00000374876 CCDC39Q9UFE4 941 aa18.16■□□□□ 0.5
CCDC40-202ENST00000374876 NOL7Q9UMY1 257 aaKnown RBP18.16■□□□□ 0.5
CCDC40-202ENST00000374876 KIF3AQ9Y496 699 aa18.16■□□□□ 0.5
CCDC40-202ENST00000374876 HMGN5P82970 282 aaKnown RBP18.16■□□□□ 0.5
CCDC40-202ENST00000374876 IMMTQ16891 758 aaKnown RBP18.16■□□□□ 0.5
CCDC40-202ENST00000374876 CHADLQ6NUI6 762 aa18.16■□□□□ 0.5
CCDC40-202ENST00000374876 RBM46Q8TBY0 533 aaKnown RBP18.16■□□□□ 0.5
CCDC40-202ENST00000374876 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.16■□□□□ 0.5
CCDC40-202ENST00000374876 ZSCAN16Q9H4T2 348 aaPredicted RBP18.16■□□□□ 0.5
CCDC40-202ENST00000374876 RAI14Q9P0K7 980 aa18.16■□□□□ 0.5
CCDC40-202ENST00000374876 SERPINA10Q9UK55 444 aa18.16■□□□□ 0.5
CCDC40-202ENST00000374876 NAP1L2Q9ULW6 460 aaPredicted RBP18.16■□□□□ 0.5
CCDC40-202ENST00000374876 LAMA4Q16363 1823 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 ANGEL2Q5VTE6 544 aaKnown RBP18.15■□□□□ 0.5
CCDC40-202ENST00000374876 SPTY2D1Q68D10 685 aaPredicted RBP18.15■□□□□ 0.5
CCDC40-202ENST00000374876 ZNF384Q8TF68 577 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 TEKT1Q969V4 418 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 CHMP4CQ96CF2 233 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 ZBED3Q96IU2 234 aaPredicted RBP18.15■□□□□ 0.5
CCDC40-202ENST00000374876 NAP1L5Q96NT1 182 aaPredicted RBP18.15■□□□□ 0.5
CCDC40-202ENST00000374876 MMP14P50281 582 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 MECOMQ03112 1051 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 RESTQ13127 1097 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 ZSCAN25Q6NSZ9 544 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 DLK2Q6UY11 383 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 DZIP1Q86YF9 867 aaKnown RBP18.15■□□□□ 0.5
CCDC40-202ENST00000374876 SMC1BQ8NDV3 1235 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 NSUN7Q8NE18 718 aaKnown RBP18.15■□□□□ 0.5
CCDC40-202ENST00000374876 LEO1Q8WVC0 666 aaPredicted RBP18.15■□□□□ 0.5
CCDC40-202ENST00000374876 ADAMTSL1Q8N6G6 1762 aa18.15■□□□□ 0.5
CCDC40-202ENST00000374876 POLR2AP24928 1970 aaKnown RBP18.14■□□□□ 0.49
CCDC40-202ENST00000374876 PTPDC1A2A3K4 754 aa18.14■□□□□ 0.49
CCDC40-202ENST00000374876 SPDYE2BA6NHP3 402 aa18.14■□□□□ 0.49
CCDC40-202ENST00000374876 SPDYE6P0CI01 402 aa18.14■□□□□ 0.49
CCDC40-202ENST00000374876 CCT2P78371 535 aaKnown RBP18.14■□□□□ 0.49
CCDC40-202ENST00000374876 CHST3Q7LGC8 479 aa18.14■□□□□ 0.49
CCDC40-202ENST00000374876 MTMR14Q8NCE2 650 aa18.14■□□□□ 0.49
CCDC40-202ENST00000374876 ZC3H15Q8WU90 426 aaKnown RBP18.14■□□□□ 0.49
CCDC40-202ENST00000374876 ZNF274Q96GC6 653 aaPredicted RBP18.14■□□□□ 0.49
CCDC40-202ENST00000374876 PUS7LQ9H0K6 701 aaKnown RBP18.14■□□□□ 0.49
CCDC40-202ENST00000374876 GGA3Q9NZ52 723 aa18.14■□□□□ 0.49
CCDC40-202ENST00000374876 PGAP2Q9UHJ9 254 aa18.14■□□□□ 0.49
CCDC40-202ENST00000374876 MYO5AQ9Y4I1 1855 aaKnown RBP18.14■□□□□ 0.49
CCDC40-202ENST00000374876 NAA16Q6N069 864 aaPredicted RBP18.13■□□□□ 0.49
CCDC40-202ENST00000374876 NSUN4Q96CB9 384 aaKnown RBP18.13■□□□□ 0.49
CCDC40-202ENST00000374876 FUCA2Q9BTY2 467 aa18.13■□□□□ 0.49
CCDC40-202ENST00000374876 MRIQ9BWK5 157 aa18.13■□□□□ 0.49
CCDC40-202ENST00000374876 CLRN2A0PK11 232 aa18.13■□□□□ 0.49
CCDC40-202ENST00000374876 IDH1O75874 414 aaKnown RBP18.13■□□□□ 0.49
CCDC40-202ENST00000374876 CTDNEP1O95476 244 aa18.13■□□□□ 0.49
CCDC40-202ENST00000374876 FGAP02671 866 aa18.13■□□□□ 0.49
CCDC40-202ENST00000374876 PTMAP06454 111 aaKnown RBP18.13■□□□□ 0.49
CCDC40-202ENST00000374876 PDIA3P30101 505 aaKnown RBP18.13■□□□□ 0.49
CCDC40-202ENST00000374876 HAND2P61296 217 aa18.13■□□□□ 0.49
CCDC40-202ENST00000374876 HDLBPQ00341 1268 aaKnown RBP18.13■□□□□ 0.49
CCDC40-202ENST00000374876 FMR1Q06787 632 aaKnown RBP eCLIP18.13■□□□□ 0.49
CCDC40-202ENST00000374876 TTF1Q15361 905 aaPredicted RBP18.13■□□□□ 0.49
CCDC40-202ENST00000374876 HHIPL2Q6UWX4 724 aa18.13■□□□□ 0.49
CCDC40-202ENST00000374876 GLIS2Q9BZE0 524 aaPredicted RBP18.13■□□□□ 0.49
CCDC40-202ENST00000374876 NUP62CLQ9H1M0 184 aa18.13■□□□□ 0.49
CCDC40-202ENST00000374876 TDRD3Q9H7E2 651 aaKnown RBP18.13■□□□□ 0.49
CCDC40-202ENST00000374876 CFAP45Q9UL16 551 aa18.13■□□□□ 0.49
CCDC40-202ENST00000374876 FOXP2O15409 715 aa18.12■□□□□ 0.49
CCDC40-202ENST00000374876 GPAA1O43292 621 aa18.12■□□□□ 0.49
CCDC40-202ENST00000374876 CCDC192P0DO97 292 aa18.12■□□□□ 0.49
CCDC40-202ENST00000374876 LIG1P18858 919 aa18.12■□□□□ 0.49
CCDC40-202ENST00000374876 APOBEC3HQ6NTF7 200 aaKnown RBP18.12■□□□□ 0.49
CCDC40-202ENST00000374876 FBXL16Q8N461 479 aa18.12■□□□□ 0.49
CCDC40-202ENST00000374876 DCPSQ96C86 337 aaKnown RBP18.12■□□□□ 0.49
CCDC40-202ENST00000374876 ZKSCAN5Q9Y2L8 839 aa18.12■□□□□ 0.49
CCDC40-202ENST00000374876 DAGLAQ9Y4D2 1042 aa18.12■□□□□ 0.49
CCDC40-202ENST00000374876 ITGBL1O95965 494 aaPredicted RBP18.11■□□□□ 0.49
CCDC40-202ENST00000374876 MCM5P33992 734 aa18.11■□□□□ 0.49
CCDC40-202ENST00000374876 MAP3K11Q16584 847 aa18.11■□□□□ 0.49
CCDC40-202ENST00000374876 ZDHHC15Q96MV8 337 aa18.11■□□□□ 0.49
CCDC40-202ENST00000374876 NCOA5Q9HCD5 579 aaKnown RBP18.11■□□□□ 0.49
CCDC40-202ENST00000374876 USP25Q9UHP3 1055 aa18.11■□□□□ 0.49
CCDC40-202ENST00000374876 TRAF5O00463 557 aa18.11■□□□□ 0.49
CCDC40-202ENST00000374876 ZNF213O14771 459 aa18.11■□□□□ 0.49
CCDC40-202ENST00000374876 SLC9C2Q5TAH2 1124 aa18.11■□□□□ 0.49
CCDC40-202ENST00000374876 ADM5C9JUS6 153 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms