RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ADGRA2Q96PE1 1338 aa26.45■■□□□ 1.83
CCDC28B-201ENST00000373602 TMED8Q6PL24 325 aaPredicted RBP26.45■■□□□ 1.82
CCDC28B-201ENST00000373602 FASTKD5Q7L8L6 764 aaKnown RBP26.45■■□□□ 1.82
CCDC28B-201ENST00000373602 MAPKAPK5Q8IW41 473 aa26.45■■□□□ 1.82
CCDC28B-201ENST00000373602 IFIT2P09913 472 aaKnown RBP26.44■■□□□ 1.82
CCDC28B-201ENST00000373602 DYNLL1P63167 89 aaKnown RBP26.44■■□□□ 1.82
CCDC28B-201ENST00000373602 LACTBP83111 547 aaPredicted RBP26.44■■□□□ 1.82
CCDC28B-201ENST00000373602 MAP3K12Q12852 859 aa26.44■■□□□ 1.82
CCDC28B-201ENST00000373602 MAGEB6Q8N7X4 407 aa26.44■■□□□ 1.82
CCDC28B-201ENST00000373602 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.44■■□□□ 1.82
CCDC28B-201ENST00000373602 FRMD4AQ9P2Q2 1039 aaPredicted RBP26.44■■□□□ 1.82
CCDC28B-201ENST00000373602 CDK5RAP2Q96SN8 1893 aa26.44■■□□□ 1.82
CCDC28B-201ENST00000373602 PHIPQ8WWQ0 1821 aa26.44■■□□□ 1.82
CCDC28B-201ENST00000373602 CERS3Q8IU89 383 aa26.43■■□□□ 1.82
CCDC28B-201ENST00000373602 PARK7Q99497 189 aaKnown RBP26.43■■□□□ 1.82
CCDC28B-201ENST00000373602 CPA4Q9UI42 421 aa26.43■■□□□ 1.82
CCDC28B-201ENST00000373602 FOCADQ5VW36 1801 aa26.43■■□□□ 1.82
CCDC28B-201ENST00000373602 SIPA1L1O43166 1804 aa26.42■■□□□ 1.82
CCDC28B-201ENST00000373602 CAP2P40123 477 aa26.42■■□□□ 1.82
CCDC28B-201ENST00000373602 RRP1BQ14684 758 aaKnown RBP26.42■■□□□ 1.82
CCDC28B-201ENST00000373602 KIF22Q14807 665 aa26.42■■□□□ 1.82
CCDC28B-201ENST00000373602 CCDC84Q86UT8 332 aaPredicted RBP26.42■■□□□ 1.82
CCDC28B-201ENST00000373602 METTL16Q86W50 562 aaKnown RBP26.42■■□□□ 1.82
CCDC28B-201ENST00000373602 ARHGAP39Q9C0H5 1083 aa26.42■■□□□ 1.82
CCDC28B-201ENST00000373602 TRIM75PA6NK02 468 aa26.41■■□□□ 1.82
CCDC28B-201ENST00000373602 TTF1Q15361 905 aaPredicted RBP26.41■■□□□ 1.82
CCDC28B-201ENST00000373602 FOXP4Q8IVH2 680 aaPredicted RBP26.41■■□□□ 1.82
CCDC28B-201ENST00000373602 MIGA1Q8NAN2 632 aa26.41■■□□□ 1.82
CCDC28B-201ENST00000373602 SLC45A1Q9Y2W3 748 aa26.41■■□□□ 1.82
CCDC28B-201ENST00000373602 PTPRFP10586 1907 aa26.41■■□□□ 1.82
CCDC28B-201ENST00000373602 GADL1Q6ZQY3 521 aa26.4■■□□□ 1.82
CCDC28B-201ENST00000373602 ARMC5Q96C12 935 aa26.4■■□□□ 1.82
CCDC28B-201ENST00000373602 TBC1D2Q9BYX2 928 aa26.4■■□□□ 1.82
CCDC28B-201ENST00000373602 PALD1Q9ULE6 856 aa26.4■■□□□ 1.82
CCDC28B-201ENST00000373602 GNRH1P01148 92 aa26.39■■□□□ 1.82
CCDC28B-201ENST00000373602 CYP2C8P10632 490 aa26.39■■□□□ 1.82
CCDC28B-201ENST00000373602 DNAJC18Q9H819 358 aa26.39■■□□□ 1.82
CCDC28B-201ENST00000373602 ZNF280CQ8ND82 737 aa26.38■■□□□ 1.81
CCDC28B-201ENST00000373602 SAP30BPQ9UHR5 308 aaKnown RBP26.38■■□□□ 1.81
CCDC28B-201ENST00000373602 PTCH2Q9Y6C5 1203 aa26.38■■□□□ 1.81
CCDC28B-201ENST00000373602 ZSWIM8A7E2V4 1837 aa26.37■■□□□ 1.81
CCDC28B-201ENST00000373602 ATAD5Q96QE3 1844 aa26.37■■□□□ 1.81
CCDC28B-201ENST00000373602 BCRP11274 1271 aa26.37■■□□□ 1.81
CCDC28B-201ENST00000373602 SPP2Q13103 211 aa26.37■■□□□ 1.81
CCDC28B-201ENST00000373602 CRACR2BQ8N4Y2 399 aaPredicted RBP26.37■■□□□ 1.81
CCDC28B-201ENST00000373602 DNAJC2Q99543 621 aaKnown RBP26.37■■□□□ 1.81
CCDC28B-201ENST00000373602 BCL11AQ9H165 835 aa26.37■■□□□ 1.81
CCDC28B-201ENST00000373602 USP17L5A8MUK1 530 aa26.36■■□□□ 1.81
CCDC28B-201ENST00000373602 GOLIM4O00461 696 aa26.36■■□□□ 1.81
CCDC28B-201ENST00000373602 HLA-DOAP06340 250 aa26.36■■□□□ 1.81
CCDC28B-201ENST00000373602 CTGFP29279 349 aa26.36■■□□□ 1.81
CCDC28B-201ENST00000373602 USP5P45974 858 aa26.36■■□□□ 1.81
CCDC28B-201ENST00000373602 PROCA1Q8NCQ7 364 aaPredicted RBP26.36■■□□□ 1.81
CCDC28B-201ENST00000373602 RIOK1Q9BRS2 568 aaKnown RBP26.36■■□□□ 1.81
CCDC28B-201ENST00000373602 TRIM34Q9BYJ4 488 aa26.36■■□□□ 1.81
CCDC28B-201ENST00000373602 AGTPBP1Q9UPW5 1226 aa26.36■■□□□ 1.81
CCDC28B-201ENST00000373602 PDE6AP16499 860 aa26.35■■□□□ 1.81
CCDC28B-201ENST00000373602 PSMC4P43686 418 aa26.35■■□□□ 1.81
CCDC28B-201ENST00000373602 PRMT2P55345 433 aa26.35■■□□□ 1.81
CCDC28B-201ENST00000373602 SLC9C2Q5TAH2 1124 aa26.35■■□□□ 1.81
CCDC28B-201ENST00000373602 LRRCC1Q9C099 1032 aa26.35■■□□□ 1.81
CCDC28B-201ENST00000373602 AS3MTQ9HBK9 375 aa26.35■■□□□ 1.81
CCDC28B-201ENST00000373602 ASNSP08243 561 aa26.34■■□□□ 1.81
CCDC28B-201ENST00000373602 ATP5JP18859 108 aa26.34■■□□□ 1.81
CCDC28B-201ENST00000373602 TRIM47Q96LD4 638 aa26.34■■□□□ 1.81
CCDC28B-201ENST00000373602 GINM1Q9NU53 330 aa26.34■■□□□ 1.81
CCDC28B-201ENST00000373602 MAGEB6P1A0A0J9YX57 407 aa26.33■■□□□ 1.81
CCDC28B-201ENST00000373602 JAG1P78504 1218 aa26.33■■□□□ 1.81
CCDC28B-201ENST00000373602 SLC9C1Q4G0N8 1177 aa26.33■■□□□ 1.81
CCDC28B-201ENST00000373602 SH3D19Q5HYK7 790 aa26.33■■□□□ 1.81
CCDC28B-201ENST00000373602 TREML2Q5T2D2 321 aa26.33■■□□□ 1.81
CCDC28B-201ENST00000373602 EDC3Q96F86 508 aaKnown RBP26.33■■□□□ 1.81
CCDC28B-201ENST00000373602 WDR18Q9BV38 432 aa26.33■■□□□ 1.81
CCDC28B-201ENST00000373602 BOLA2Q9H3K6 86 aa26.33■■□□□ 1.81
CCDC28B-201ENST00000373602 MYH1P12882 1939 aa26.32■■□□□ 1.8
CCDC28B-201ENST00000373602 ECM2O94769 699 aaPredicted RBP26.32■■□□□ 1.8
CCDC28B-201ENST00000373602 SLC4A8Q2Y0W8 1093 aa26.32■■□□□ 1.8
CCDC28B-201ENST00000373602 NBPF11Q86T75 865 aa26.32■■□□□ 1.8
CCDC28B-201ENST00000373602 ZNF333Q96JL9 665 aa26.32■■□□□ 1.8
CCDC28B-201ENST00000373602 PAG1Q9NWQ8 432 aa26.32■■□□□ 1.8
CCDC28B-201ENST00000373602 SRRDQ9UH36 339 aa26.32■■□□□ 1.8
CCDC28B-201ENST00000373602 ZNF532Q9HCE3 1301 aa26.32■■□□□ 1.8
CCDC28B-201ENST00000373602 TCRBV5S4A2TA0A5A2 114 aa26.31■■□□□ 1.8
CCDC28B-201ENST00000373602 POTEFA5A3E0 1075 aa26.31■■□□□ 1.8
CCDC28B-201ENST00000373602 FMNL1O95466 1100 aaPredicted RBP26.31■■□□□ 1.8
CCDC28B-201ENST00000373602 HOXD10P28358 340 aa26.31■■□□□ 1.8
CCDC28B-201ENST00000373602 HMGCS2P54868 508 aa26.31■■□□□ 1.8
CCDC28B-201ENST00000373602 SMCR8Q8TEV9 937 aaPredicted RBP26.31■■□□□ 1.8
CCDC28B-201ENST00000373602 HAUS7Q99871 368 aa26.31■■□□□ 1.8
CCDC28B-201ENST00000373602 EHD4Q9H223 541 aa26.31■■□□□ 1.8
CCDC28B-201ENST00000373602 LOC285556D6RIA3 1793 aa26.3■■□□□ 1.8
CCDC28B-201ENST00000373602 HTTP42858 3142 aa26.3■■□□□ 1.8
CCDC28B-201ENST00000373602 SMARCA5O60264 1052 aaPredicted RBP26.3■■□□□ 1.8
CCDC28B-201ENST00000373602 GDF11O95390 407 aa26.3■■□□□ 1.8
CCDC28B-201ENST00000373602 OSBPP22059 807 aa26.3■■□□□ 1.8
CCDC28B-201ENST00000373602 TTC6Q86TZ1 520 aa26.3■■□□□ 1.8
CCDC28B-201ENST00000373602 DCTPP1Q9H773 170 aa26.3■■□□□ 1.8
CCDC28B-201ENST00000373602 PNMA3Q9UL41 463 aa26.3■■□□□ 1.8
CCDC28B-201ENST00000373602 ZBTB21Q9ULJ3 1066 aa26.3■■□□□ 1.8
CCDC28B-201ENST00000373602 FCGRTP55899 365 aa26.29■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms