RNA–Protein interactions for RNA: ENST00000373548.7

HDAC1-201, Transcript of histone deacetylase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-201ENST00000373548 UBE2Q2LH0YL09 131 aa22.79■■□□□ 1.24
HDAC1-201ENST00000373548 PPEF1O14829 653 aaPredicted RBP22.79■■□□□ 1.24
HDAC1-201ENST00000373548 ORC4O43929 436 aa22.79■■□□□ 1.24
HDAC1-201ENST00000373548 GSTO1P78417 241 aa22.79■■□□□ 1.24
HDAC1-201ENST00000373548 SSRP1Q08945 709 aaKnown RBP22.79■■□□□ 1.24
HDAC1-201ENST00000373548 TMC4Q7Z404 712 aa22.79■■□□□ 1.24
HDAC1-201ENST00000373548 DDX19AQ9NUU7 478 aaKnown RBP22.79■■□□□ 1.24
HDAC1-201ENST00000373548 NR1I2O75469 434 aa22.78■■□□□ 1.24
HDAC1-201ENST00000373548 RXRBP28702 533 aa22.78■■□□□ 1.24
HDAC1-201ENST00000373548 MYSM1Q5VVJ2 828 aa22.78■■□□□ 1.24
HDAC1-201ENST00000373548 SP8Q8IXZ3 490 aa22.78■■□□□ 1.24
HDAC1-201ENST00000373548 MKRN1Q9UHC7 482 aaKnown RBP22.78■■□□□ 1.24
HDAC1-201ENST00000373548 FANCBQ8NB91 859 aa22.78■■□□□ 1.24
HDAC1-201ENST00000373548 FLAD1Q8NFF5 587 aa22.78■■□□□ 1.24
HDAC1-201ENST00000373548 SH3RF3Q8TEJ3 882 aaPredicted RBP22.78■■□□□ 1.24
HDAC1-201ENST00000373548 SRGNP10124 158 aa22.77■■□□□ 1.24
HDAC1-201ENST00000373548 CAMK4Q16566 473 aa22.77■■□□□ 1.24
HDAC1-201ENST00000373548 NUP133Q8WUM0 1156 aa22.77■■□□□ 1.24
HDAC1-201ENST00000373548 CLSTN2Q9H4D0 955 aa22.77■■□□□ 1.24
HDAC1-201ENST00000373548 COL11A2P13942 1736 aaPredicted RBP22.77■■□□□ 1.24
HDAC1-201ENST00000373548 CDK5RAP2Q96SN8 1893 aa22.77■■□□□ 1.24
HDAC1-201ENST00000373548 C6orf229H3BNL8 230 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 PPP4CP60510 307 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 MAP3K11Q16584 847 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 NBPF11Q86T75 865 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 IQCA1Q86XH1 822 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 MCM9Q9NXL9 1143 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 ATP6V0A2Q9Y487 856 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 CLIC4Q9Y696 253 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 NAV1Q8NEY1 1877 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 MROH7-TTC4A0A0A0MT08 1334 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 MYH6P13533 1939 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 CCDC196A0A1B0GTZ2 297 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 LDHCP07864 332 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 USP17L8P0C7I0 530 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 POLR3EQ9NVU0 708 aa22.76■■□□□ 1.23
HDAC1-201ENST00000373548 BAG3O95817 575 aa22.75■■□□□ 1.23
HDAC1-201ENST00000373548 SLC3A2P08195 630 aaKnown RBP22.75■■□□□ 1.23
HDAC1-201ENST00000373548 MMP10P09238 476 aa22.75■■□□□ 1.23
HDAC1-201ENST00000373548 GUCY1A2P33402 732 aa22.75■■□□□ 1.23
HDAC1-201ENST00000373548 IFIT1BQ5T764 474 aaKnown RBP22.75■■□□□ 1.23
HDAC1-201ENST00000373548 LINC00301Q8NCQ3 95 aa22.75■■□□□ 1.23
HDAC1-201ENST00000373548 PDLIM2Q96JY6 352 aa22.75■■□□□ 1.23
HDAC1-201ENST00000373548 TNMDQ9H2S6 317 aa22.75■■□□□ 1.23
HDAC1-201ENST00000373548 RTN4Q9NQC3 1192 aaKnown RBP22.75■■□□□ 1.23
HDAC1-201ENST00000373548 NPR1P16066 1061 aa22.75■■□□□ 1.23
HDAC1-201ENST00000373548 USP5P45974 858 aa22.75■■□□□ 1.23
HDAC1-201ENST00000373548 ME1P48163 572 aa22.75■■□□□ 1.23
HDAC1-201ENST00000373548 CCAR1Q8IX12 1150 aaKnown RBP22.75■■□□□ 1.23
HDAC1-201ENST00000373548 CRACR2BQ8N4Y2 399 aaPredicted RBP22.75■■□□□ 1.23
HDAC1-201ENST00000373548 RTFDC1Q9BY42 306 aaPredicted RBP22.75■■□□□ 1.23
HDAC1-201ENST00000373548 RGS17Q9UGC6 210 aaPredicted RBP22.75■■□□□ 1.23
HDAC1-201ENST00000373548 TAOK2Q9UL54 1235 aa22.75■■□□□ 1.23
HDAC1-201ENST00000373548 RGPD3A6NKT7 1758 aaPredicted RBP22.74■■□□□ 1.23
HDAC1-201ENST00000373548 RGPD4Q7Z3J3 1758 aa22.74■■□□□ 1.23
HDAC1-201ENST00000373548 TRIM29Q14134 588 aa22.74■■□□□ 1.23
HDAC1-201ENST00000373548 RBM43Q6ZSC3 357 aaKnown RBP22.74■■□□□ 1.23
HDAC1-201ENST00000373548 TRIM22Q8IYM9 498 aa22.74■■□□□ 1.23
HDAC1-201ENST00000373548 CMTR1Q8N1G2 835 aaKnown RBP22.74■■□□□ 1.23
HDAC1-201ENST00000373548 WASF1Q92558 559 aa22.74■■□□□ 1.23
HDAC1-201ENST00000373548 GOLPH3LQ9H4A5 285 aa22.74■■□□□ 1.23
HDAC1-201ENST00000373548 YEATS4O95619 227 aa22.73■■□□□ 1.23
HDAC1-201ENST00000373548 C12orf60Q5U649 245 aa22.73■■□□□ 1.23
HDAC1-201ENST00000373548 FAM43AQ8N2R8 423 aa22.73■■□□□ 1.23
HDAC1-201ENST00000373548 NOL10Q9BSC4 688 aaKnown RBP22.73■■□□□ 1.23
HDAC1-201ENST00000373548 PCDHA7Q9UN72 937 aa22.73■■□□□ 1.23
HDAC1-201ENST00000373548 PDE4BQ07343 736 aa22.73■■□□□ 1.23
HDAC1-201ENST00000373548 PPP2R5BQ15173 497 aa22.73■■□□□ 1.23
HDAC1-201ENST00000373548 SLC4A8Q2Y0W8 1093 aa22.73■■□□□ 1.23
HDAC1-201ENST00000373548 FAM47AQ5JRC9 791 aa22.73■■□□□ 1.23
HDAC1-201ENST00000373548 CCDC82Q8N4S0 544 aa22.73■■□□□ 1.23
HDAC1-201ENST00000373548 PARP3Q9Y6F1 533 aa22.73■■□□□ 1.23
HDAC1-201ENST00000373548 CCDC192P0DO97 292 aa22.72■■□□□ 1.23
HDAC1-201ENST00000373548 U2AF2P26368 475 aaKnown RBP eCLIP22.72■■□□□ 1.23
HDAC1-201ENST00000373548 STK38Q15208 465 aa22.72■■□□□ 1.23
HDAC1-201ENST00000373548 UVSSAQ2YD98 709 aa22.72■■□□□ 1.23
HDAC1-201ENST00000373548 MFSD14BQ5SR56 506 aa22.72■■□□□ 1.23
HDAC1-201ENST00000373548 CATIPQ7Z7H3 387 aa22.72■■□□□ 1.23
HDAC1-201ENST00000373548 TRIM44Q96DX7 344 aaPredicted RBP22.72■■□□□ 1.23
HDAC1-201ENST00000373548 NMT2O60551 498 aa22.72■■□□□ 1.23
HDAC1-201ENST00000373548 DEXIO95424 95 aa22.72■■□□□ 1.23
HDAC1-201ENST00000373548 ANO1Q5XXA6 986 aa22.72■■□□□ 1.23
HDAC1-201ENST00000373548 MSL1Q68DK7 614 aa22.72■■□□□ 1.23
HDAC1-201ENST00000373548 CKAP2LQ8IYA6 745 aa22.72■■□□□ 1.23
HDAC1-201ENST00000373548 FAM205AQ6ZU69 1335 aa22.71■■□□□ 1.23
HDAC1-201ENST00000373548 ROBO3Q96MS0 1386 aa22.71■■□□□ 1.23
HDAC1-201ENST00000373548 PDE6BP35913 854 aa22.71■■□□□ 1.23
HDAC1-201ENST00000373548 BTDP43251 543 aa22.71■■□□□ 1.23
HDAC1-201ENST00000373548 TROAPQ12815 778 aa22.71■■□□□ 1.23
HDAC1-201ENST00000373548 OLFM4Q6UX06 510 aa22.71■■□□□ 1.23
HDAC1-201ENST00000373548 KCNG4Q8TDN1 519 aa22.71■■□□□ 1.23
HDAC1-201ENST00000373548 TBC1D22AQ8WUA7 517 aa22.71■■□□□ 1.23
HDAC1-201ENST00000373548 TGFBRAP1Q8WUH2 860 aa22.71■■□□□ 1.23
HDAC1-201ENST00000373548 GPR75-ASB3A0A0A6YYF3 556 aa22.7■■□□□ 1.23
HDAC1-201ENST00000373548 SNW1Q13573 536 aaKnown RBP22.7■■□□□ 1.23
HDAC1-201ENST00000373548 ADALQ6DHV7 355 aa22.7■■□□□ 1.23
HDAC1-201ENST00000373548 ENGASEQ8NFI3 743 aa22.7■■□□□ 1.23
HDAC1-201ENST00000373548 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.7■■□□□ 1.23
HDAC1-201ENST00000373548 RIMBP2O15034 1052 aa22.7■■□□□ 1.22
HDAC1-201ENST00000373548 SPTLC2O15270 562 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms