RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 PFKFB2O60825 505 aa16.55■□□□□ 0.24
LDB3-204ENST00000372066 LETM1O95202 739 aaPredicted RBP16.55■□□□□ 0.24
LDB3-204ENST00000372066 MCAMP43121 646 aa16.55■□□□□ 0.24
LDB3-204ENST00000372066 NASPP49321 788 aaPredicted RBP16.55■□□□□ 0.24
LDB3-204ENST00000372066 FGD1P98174 961 aa16.55■□□□□ 0.24
LDB3-204ENST00000372066 EXOSC10Q01780 885 aaKnown RBP16.55■□□□□ 0.24
LDB3-204ENST00000372066 TTLL12Q14166 644 aaPredicted RBP16.55■□□□□ 0.24
LDB3-204ENST00000372066 UBE3CQ15386 1083 aa16.55■□□□□ 0.24
LDB3-204ENST00000372066 TTLL5Q6EMB2 1281 aa16.55■□□□□ 0.24
LDB3-204ENST00000372066 STOX1Q6ZVD7 989 aa16.55■□□□□ 0.24
LDB3-204ENST00000372066 PANK2Q9BZ23 570 aa16.55■□□□□ 0.24
LDB3-204ENST00000372066 ANKRD2Q9GZV1 360 aa16.55■□□□□ 0.24
LDB3-204ENST00000372066 CASP8AP2Q9UKL3 1982 aa16.54■□□□□ 0.24
LDB3-204ENST00000372066 VPS37CA5D8V6 355 aaPredicted RBP16.54■□□□□ 0.24
LDB3-204ENST00000372066 CHGBP05060 677 aa16.54■□□□□ 0.24
LDB3-204ENST00000372066 ADD2P35612 726 aa16.54■□□□□ 0.24
LDB3-204ENST00000372066 HMGN5P82970 282 aaKnown RBP16.54■□□□□ 0.24
LDB3-204ENST00000372066 CCDC173Q0VFZ6 552 aa16.54■□□□□ 0.24
LDB3-204ENST00000372066 ZNF804BA4D1E1 1349 aa16.54■□□□□ 0.24
LDB3-204ENST00000372066 MYO3BQ8WXR4 1341 aa16.54■□□□□ 0.24
LDB3-204ENST00000372066 POLR2AP24928 1970 aaKnown RBP16.54■□□□□ 0.24
LDB3-204ENST00000372066 WNT10BO00744 389 aa16.53■□□□□ 0.24
LDB3-204ENST00000372066 KRT85P78386 507 aa16.53■□□□□ 0.24
LDB3-204ENST00000372066 ZNF274Q96GC6 653 aaPredicted RBP16.53■□□□□ 0.24
LDB3-204ENST00000372066 TCEANC2Q96MN5 208 aa16.53■□□□□ 0.24
LDB3-204ENST00000372066 ELP1O95163 1332 aa16.53■□□□□ 0.24
LDB3-204ENST00000372066 ZMYM6O95789 1325 aa16.53■□□□□ 0.24
LDB3-204ENST00000372066 NF2P35240 595 aa16.52■□□□□ 0.24
LDB3-204ENST00000372066 CCDC102BQ68D86 513 aa16.52■□□□□ 0.24
LDB3-204ENST00000372066 SMARCC2Q8TAQ2 1214 aa16.52■□□□□ 0.24
LDB3-204ENST00000372066 BRF1Q92994 677 aa16.52■□□□□ 0.24
LDB3-204ENST00000372066 RBM27Q9P2N5 1060 aaKnown RBP16.52■□□□□ 0.24
LDB3-204ENST00000372066 CNPY2Q9Y2B0 182 aa16.52■□□□□ 0.24
LDB3-204ENST00000372066 KLRK1P26718 216 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 MMP14P50281 582 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 EVCP57679 992 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 GTF2IP78347 998 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 CCDC183Q5T5S1 534 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 KIAA0825Q8IV33 1275 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 CHAMP1Q96JM3 812 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 HDAC9Q9UKV0 1011 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 GPAA1O43292 621 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 CHRNDQ07001 517 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 COL9A3Q14050 684 aaPredicted RBP16.51■□□□□ 0.23
LDB3-204ENST00000372066 PPP1R9BQ96SB3 815 aa16.51■□□□□ 0.23
LDB3-204ENST00000372066 CTU1Q7Z7A3 348 aaKnown RBP16.5■□□□□ 0.23
LDB3-204ENST00000372066 SCAND2PQ9GZW5 306 aaPredicted RBP16.5■□□□□ 0.23
LDB3-204ENST00000372066 ZSCAN16Q9H4T2 348 aaPredicted RBP16.5■□□□□ 0.23
LDB3-204ENST00000372066 MYH13Q9UKX3 1938 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 SYCE3A1L190 88 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 FIBPO43427 364 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 TBC1D8O95759 1140 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 MCM5P33992 734 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 PHKA1P46020 1223 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 MKRN3Q13064 507 aaKnown RBP16.49■□□□□ 0.23
LDB3-204ENST00000372066 STK3Q13188 491 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 PRKG1Q13976 671 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 SLFNL1Q499Z3 407 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 FAM184AQ8NB25 1140 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 RGS22Q8NE09 1264 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 NCOA7Q8NI08 942 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 PUS7LQ9H0K6 701 aaKnown RBP16.49■□□□□ 0.23
LDB3-204ENST00000372066 GDPD2Q9HCC8 539 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 CD209Q9NNX6 404 aa16.49■□□□□ 0.23
LDB3-204ENST00000372066 SNAP23O00161 211 aa16.48■□□□□ 0.23
LDB3-204ENST00000372066 FOXP2O15409 715 aa16.48■□□□□ 0.23
LDB3-204ENST00000372066 GADD45BO75293 160 aaPredicted RBP16.48■□□□□ 0.23
LDB3-204ENST00000372066 FGAP02671 866 aa16.48■□□□□ 0.23
LDB3-204ENST00000372066 DNM1Q05193 864 aaKnown RBP16.48■□□□□ 0.23
LDB3-204ENST00000372066 SCRN1Q12765 414 aa16.48■□□□□ 0.23
LDB3-204ENST00000372066 MAP3K12Q12852 859 aa16.48■□□□□ 0.23
LDB3-204ENST00000372066 ALX1Q15699 326 aa16.48■□□□□ 0.23
LDB3-204ENST00000372066 SLC9C2Q5TAH2 1124 aa16.48■□□□□ 0.23
LDB3-204ENST00000372066 NAA16Q6N069 864 aaPredicted RBP16.48■□□□□ 0.23
LDB3-204ENST00000372066 ARMC9Q7Z3E5 817 aa16.48■□□□□ 0.23
LDB3-204ENST00000372066 RALYLQ86SE5 291 aaKnown RBP16.48■□□□□ 0.23
LDB3-204ENST00000372066 APOBEC3FQ8IUX4 373 aaKnown RBP16.48■□□□□ 0.23
LDB3-204ENST00000372066 HELBQ8NG08 1087 aaPredicted RBP16.48■□□□□ 0.23
LDB3-204ENST00000372066 TSPY26PQ9H489 355 aa16.48■□□□□ 0.23
LDB3-204ENST00000372066 ZNF213O14771 459 aa16.47■□□□□ 0.23
LDB3-204ENST00000372066 PDE6AP16499 860 aa16.47■□□□□ 0.23
LDB3-204ENST00000372066 FOXD4L6Q3SYB3 417 aaPredicted RBP16.47■□□□□ 0.23
LDB3-204ENST00000372066 PI16Q6UXB8 463 aa16.47■□□□□ 0.23
LDB3-204ENST00000372066 FOXD4L3Q6VB84 417 aaPredicted RBP16.47■□□□□ 0.23
LDB3-204ENST00000372066 SPATA5Q8NB90 893 aa16.47■□□□□ 0.23
LDB3-204ENST00000372066 NSUN7Q8NE18 718 aaKnown RBP16.47■□□□□ 0.23
LDB3-204ENST00000372066 TRIM44Q96DX7 344 aaPredicted RBP16.47■□□□□ 0.23
LDB3-204ENST00000372066 PIH1D3Q9NQM4 214 aaKnown RBP16.47■□□□□ 0.23
LDB3-204ENST00000372066 DHX16O60231 1041 aaKnown RBP16.47■□□□□ 0.23
LDB3-204ENST00000372066 TM4SF4P48230 202 aa16.47■□□□□ 0.23
LDB3-204ENST00000372066 SOX10P56693 466 aa16.47■□□□□ 0.23
LDB3-204ENST00000372066 DLGAP5Q15398 846 aa16.47■□□□□ 0.23
LDB3-204ENST00000372066 ATL3Q6DD88 541 aa16.47■□□□□ 0.23
LDB3-204ENST00000372066 MB21D2Q8IYB1 491 aaPredicted RBP16.47■□□□□ 0.23
LDB3-204ENST00000372066 ZNF532Q9HCE3 1301 aa16.46■□□□□ 0.23
LDB3-204ENST00000372066 SALL1Q9NSC2 1324 aa16.46■□□□□ 0.23
LDB3-204ENST00000372066 TCRBV5S4A2TA0A5A2 114 aa16.46■□□□□ 0.23
LDB3-204ENST00000372066 H3BQV1 296 aa16.46■□□□□ 0.23
LDB3-204ENST00000372066 IDH1O75874 414 aaKnown RBP16.46■□□□□ 0.23
LDB3-204ENST00000372066 GNAT2P19087 354 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms