RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 TRIML1Q8N9V2 468 aa16.42■□□□□ 0.22
CD48-201ENST00000368045 L2HGDHQ9H9P8 463 aa16.42■□□□□ 0.22
CD48-201ENST00000368045 TACC3Q9Y6A5 838 aa16.42■□□□□ 0.22
CD48-201ENST00000368045 SLIT2O94813 1529 aa16.42■□□□□ 0.22
CD48-201ENST00000368045 NT5DC1Q5TFE4 455 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 VSTM4Q8IW00 320 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 STK11IPQ8N1F8 1099 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 LCORLQ8N3X6 602 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 MLKLQ8NB16 471 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 ZNF397Q8NF99 534 aaPredicted RBP16.41■□□□□ 0.22
CD48-201ENST00000368045 TMX1Q9H3N1 280 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 FBXO2Q9UK22 296 aaPredicted RBP16.41■□□□□ 0.22
CD48-201ENST00000368045 PCDHA5Q9Y5H7 936 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 ECM29Q5VYK3 1845 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 BTBD18B2RXH4 712 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 ATP1A3P13637 1013 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 CT47A1Q5JQC4 288 aaPredicted RBP16.41■□□□□ 0.22
CD48-201ENST00000368045 INTS5Q6P9B9 1019 aaKnown RBP16.41■□□□□ 0.22
CD48-201ENST00000368045 CDC5LQ99459 802 aaKnown RBP16.41■□□□□ 0.22
CD48-201ENST00000368045 INCENPQ9NQS7 918 aa16.41■□□□□ 0.22
CD48-201ENST00000368045 ZNF215Q9UL58 517 aaPredicted RBP16.41■□□□□ 0.22
CD48-201ENST00000368045 STRCQ7RTU9 1775 aa16.4■□□□□ 0.22
CD48-201ENST00000368045 CAMTA2O94983 1202 aa16.4■□□□□ 0.22
CD48-201ENST00000368045 TOB1P50616 345 aaPredicted RBP16.4■□□□□ 0.22
CD48-201ENST00000368045 CBX1P83916 185 aa16.4■□□□□ 0.22
CD48-201ENST00000368045 ZNF654Q8IZM8 581 aa16.4■□□□□ 0.22
CD48-201ENST00000368045 FANCBQ8NB91 859 aa16.4■□□□□ 0.22
CD48-201ENST00000368045 SYTL4Q96C24 671 aaPredicted RBP16.4■□□□□ 0.22
CD48-201ENST00000368045 UBAC1Q9BSL1 405 aa16.4■□□□□ 0.22
CD48-201ENST00000368045 GTPBP4Q9BZE4 634 aaKnown RBP16.4■□□□□ 0.22
CD48-201ENST00000368045 LRP2BPQ9P2M1 347 aa16.4■□□□□ 0.22
CD48-201ENST00000368045 SRPRBQ9Y5M8 271 aaKnown RBP16.4■□□□□ 0.22
CD48-201ENST00000368045 MYO5AQ9Y4I1 1855 aaKnown RBP16.39■□□□□ 0.21
CD48-201ENST00000368045 PRKAB2O43741 272 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 XBP1P17861 261 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 BCAMP50895 628 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 PPARAQ07869 468 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 POSTNQ15063 836 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 CFAP100Q494V2 611 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 RRP12Q5JTH9 1297 aaKnown RBP16.39■□□□□ 0.21
CD48-201ENST00000368045 ESR2Q92731 530 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 CCDC34Q96HJ3 373 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 RNF26Q9BY78 433 aaPredicted RBP16.39■□□□□ 0.21
CD48-201ENST00000368045 SEC31BQ9NQW1 1179 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 PHLPP2Q6ZVD8 1323 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 BCORQ6W2J9 1755 aa16.39■□□□□ 0.21
CD48-201ENST00000368045 NTSR2O95665 410 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 TOP1P11387 765 aaKnown RBP16.38■□□□□ 0.21
CD48-201ENST00000368045 PCP11498 1178 aaKnown RBP16.38■□□□□ 0.21
CD48-201ENST00000368045 GUCY1A2P33402 732 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 SARSP49591 514 aaKnown RBP16.38■□□□□ 0.21
CD48-201ENST00000368045 DMTNQ08495 405 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 ISM2Q6H9L7 571 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 FOXP4Q8IVH2 680 aaPredicted RBP16.38■□□□□ 0.21
CD48-201ENST00000368045 ENOX1Q8TC92 643 aaKnown RBP16.38■□□□□ 0.21
CD48-201ENST00000368045 TOMM22Q9NS69 142 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 GNL3LQ9NVN8 582 aaKnown RBP16.38■□□□□ 0.21
CD48-201ENST00000368045 MAN1B1Q9UKM7 699 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 ZNF804BA4D1E1 1349 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 RREB1Q92766 1687 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 BMP15O95972 392 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 ZSCAN20P17040 1043 aaPredicted RBP16.38■□□□□ 0.21
CD48-201ENST00000368045 CYP7A1P22680 504 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 CRKLP46109 303 aaKnown RBP16.38■□□□□ 0.21
CD48-201ENST00000368045 CCDC93Q567U6 631 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 SMARCE1Q969G3 411 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 FANCLQ9NW38 375 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 DDX41Q9UJV9 622 aaKnown RBP16.38■□□□□ 0.21
CD48-201ENST00000368045 KCNJ14Q9UNX9 436 aa16.38■□□□□ 0.21
CD48-201ENST00000368045 BCL9LQ86UU0 1499 aa16.37■□□□□ 0.21
CD48-201ENST00000368045 CICQ96RK0 1608 aaPredicted RBP16.37■□□□□ 0.21
CD48-201ENST00000368045 CHD4Q14839 1912 aa16.37■□□□□ 0.21
CD48-201ENST00000368045 ZSCAN12O43309 604 aa16.37■□□□□ 0.21
CD48-201ENST00000368045 ETF1P62495 437 aaKnown RBP16.37■□□□□ 0.21
CD48-201ENST00000368045 CHRNDQ07001 517 aa16.37■□□□□ 0.21
CD48-201ENST00000368045 MORC3Q14149 939 aa16.37■□□□□ 0.21
CD48-201ENST00000368045 SEC23AQ15436 765 aa16.37■□□□□ 0.21
CD48-201ENST00000368045 DPF2Q92785 391 aa16.37■□□□□ 0.21
CD48-201ENST00000368045 LAMB2P55268 1798 aa16.37■□□□□ 0.21
CD48-201ENST00000368045 MAGEB6P1A0A0J9YX57 407 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 UBE2Q2LH0YL09 131 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 ARHGAP6O43182 974 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 ZNF18P17022 549 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 BMP6P22004 513 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 AKAP17AQ02040 695 aaKnown RBP16.36■□□□□ 0.21
CD48-201ENST00000368045 SPATA20Q8TB22 786 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 RBM28Q9NW13 759 aaKnown RBP16.36■□□□□ 0.21
CD48-201ENST00000368045 GOLGA6L9A6NEM1 432 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 SNAP23O00161 211 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 POLR2DO15514 142 aaKnown RBP16.36■□□□□ 0.21
CD48-201ENST00000368045 CALM1P0DP23 149 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 CALM2P0DP24 149 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 CALM3P0DP25 149 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 ERCC5P28715 1186 aaPredicted RBP16.36■□□□□ 0.21
CD48-201ENST00000368045 PDE4BQ07343 736 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 TBX2Q13207 712 aaPredicted RBP16.36■□□□□ 0.21
CD48-201ENST00000368045 NAA30Q147X3 362 aaPredicted RBP16.36■□□□□ 0.21
CD48-201ENST00000368045 SYT10Q6XYQ8 523 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 ZKSCAN3Q9BRR0 538 aa16.36■□□□□ 0.21
CD48-201ENST00000368045 BRIP1Q9BX63 1249 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms