RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 LZTFL1Q9NQ48 299 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 CTNND2Q9UQB3 1225 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 IGSF1Q8N6C5 1336 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 CCDC122Q5T0U0 273 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 PRPF31Q8WWY3 499 aaKnown RBP10.1□□□□□ -0.79
SYNE1-205ENST00000367251 RPGRIP1Q96KN7 1286 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 MTMR6Q9Y217 621 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 PARP3Q9Y6F1 533 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 MAST3O60307 1309 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 VWA3AA6NCI4 1184 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 FAM13AO94988 1023 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 KARSQ15046 597 aaKnown RBP10.1□□□□□ -0.79
SYNE1-205ENST00000367251 POSTNQ15063 836 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 ANKS4BQ8N8V4 417 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 NUCKS1Q9H1E3 243 aaKnown RBP10.1□□□□□ -0.79
SYNE1-205ENST00000367251 RTCBQ9Y3I0 505 aaKnown RBP10.1□□□□□ -0.79
SYNE1-205ENST00000367251 STX17P56962 302 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 CROCCP2Q86T23 111 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 RBM17Q96I25 401 aaKnown RBP10.09□□□□□ -0.79
SYNE1-205ENST00000367251 YEATS2Q9ULM3 1422 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 CAPN2P17655 700 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 RBM6P78332 1123 aaKnown RBP10.09□□□□□ -0.79
SYNE1-205ENST00000367251 CUL4AQ13619 759 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 LSG1Q9H089 658 aaKnown RBP10.09□□□□□ -0.79
SYNE1-205ENST00000367251 CIAO1O76071 339 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 IL17REQ8NFR9 667 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 WDR66Q8TBY9 1149 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 NOC4LQ9BVI4 516 aaKnown RBP10.09□□□□□ -0.79
SYNE1-205ENST00000367251 CDC42BPAQ5VT25 1732 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 EBAG9O00559 213 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 PCP11498 1178 aaKnown RBP10.09□□□□□ -0.79
SYNE1-205ENST00000367251 ZNF174Q15697 407 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 HSP90AA4PQ58FG1 418 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 C6orf163Q5TEZ5 329 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 SPATA5Q8NB90 893 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 PPP1R14CQ8TAE6 165 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 COPRSQ9NQ92 184 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 SERPINA10Q9UK55 444 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 A0A1W2PQ27 194 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 A0A1W2PQ64 194 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 A0A1W2PQD8 194 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 ATP2A1O14983 1001 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 HIBADHP31937 336 aaKnown RBP10.09□□□□□ -0.79
SYNE1-205ENST00000367251 HAUS3Q68CZ6 603 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 SPATA24Q86W54 205 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 CCDC26Q8TAB7 109 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 FAM76AQ8TAV0 307 aa10.09□□□□□ -0.79
SYNE1-205ENST00000367251 MTRF1LQ9UGC7 380 aaKnown RBP10.09□□□□□ -0.79
SYNE1-205ENST00000367251 MYSM1Q5VVJ2 828 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 MAP4K1Q92918 833 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 IVNS1ABPQ9Y6Y0 642 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 ZMYM6O95789 1325 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 CMA1P23946 247 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 TCIRG1Q13488 830 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 SH2D4AQ9H788 454 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 ARMT1Q9H993 441 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 IQSEC3Q9UPP2 1182 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-205ENST00000367251 NLRP1Q9C000 1473 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 KCNA4P22459 653 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 TNNI2P48788 182 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 TBC1D8BQ0IIM8 1120 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 FAM89AQ96GI7 184 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 IKBKGQ9Y6K9 419 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 ADCY9O60503 1353 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 USP6P35125 1406 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 SNX16P57768 344 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 MCTP2Q6DN12 878 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 JAKMIP2Q96AA8 810 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 ANTXR1Q9H6X2 564 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 KIAA1468Q9P260 1216 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 POLR2DO15514 142 aaKnown RBP10.08□□□□□ -0.8
SYNE1-205ENST00000367251 CALUO43852 315 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-205ENST00000367251 FAM212AQ96EL1 285 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 VPS18Q9P253 973 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 MTUS1Q9ULD2 1270 aa10.08□□□□□ -0.8
SYNE1-205ENST00000367251 MED14O60244 1454 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 EPB41P11171 864 aaKnown RBP10.07□□□□□ -0.8
SYNE1-205ENST00000367251 PDE4DQ08499 809 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 AKNAD1Q5T1N1 836 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 NCOA5Q9HCD5 579 aaKnown RBP10.07□□□□□ -0.8
SYNE1-205ENST00000367251 ZHX1Q9UKY1 873 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-205ENST00000367251 GALNT17Q6IS24 598 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 HELBQ8NG08 1087 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-205ENST00000367251 SREK1Q8WXA9 508 aaKnown RBP10.07□□□□□ -0.8
SYNE1-205ENST00000367251 STK32BQ9NY57 414 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 RSPH14Q9UHP6 348 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 RXRAP19793 462 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 IMPG2Q9BZV3 1241 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 ARPP21Q9UBL0 812 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-205ENST00000367251 PHKG2P15735 406 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 ATP5DP30049 168 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 NONOQ15233 471 aaKnown RBP eCLIP10.07□□□□□ -0.8
SYNE1-205ENST00000367251 CFAP58Q5T655 872 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 GPT2Q8TD30 523 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 V9GY48 417 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-205ENST00000367251 ABCC3O15438 1527 aa10.07□□□□□ -0.8
SYNE1-205ENST00000367251 PIK3AP1Q6ZUJ8 805 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 CCDC84Q86UT8 332 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-205ENST00000367251 ZC3H12CQ9C0D7 883 aaKnown RBP10.06□□□□□ -0.8
SYNE1-205ENST00000367251 ATG3Q9NT62 314 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms