RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 NR1I2O75469 434 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 CAPN2P17655 700 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 UVSSAQ2YD98 709 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 MCMDC2Q4G0Z9 681 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 ZKSCAN3Q9BRR0 538 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 ANKRD2Q9GZV1 360 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 TMEM2Q9UHN6 1383 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 CALUO43852 315 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-202ENST00000358808 RBBP5Q15291 538 aaKnown RBP11.35□□□□□ -0.59
CLIP1-202ENST00000358808 KRT222Q8N1A0 295 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 DDX27Q96GQ7 796 aaKnown RBP11.35□□□□□ -0.59
CLIP1-202ENST00000358808 HMGB1P1B2RPK0 211 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-202ENST00000358808 TRAF5O00463 557 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 STMN1P16949 149 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 ARFGAP2Q8N6H7 521 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 SPC25Q9HBM1 224 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 PCDH11XQ9BZA7 1347 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 PCDH11YQ9BZA8 1340 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 EBAG9O00559 213 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 PRR16Q569H4 304 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 CCDC122Q5T0U0 273 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 UTP14CQ5TAP6 766 aaKnown RBP11.34□□□□□ -0.59
CLIP1-202ENST00000358808 ZSCAN22P10073 491 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-202ENST00000358808 CHST3Q7LGC8 479 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 TTC6Q86TZ1 520 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 LUC7L2Q9Y383 392 aaKnown RBP11.34□□□□□ -0.59
CLIP1-202ENST00000358808 DKC1O60832 514 aaKnown RBP eCLIP11.34□□□□□ -0.59
CLIP1-202ENST00000358808 HCLS1P14317 486 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-202ENST00000358808 FBLN1P23142 703 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 RPS6KA2Q15349 733 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 LETM2Q2VYF4 491 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 PARD3BQ8TEW8 1205 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 I3L4J1 428 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 IGHDP01880 384 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 ITKQ08881 620 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 BSPRYQ5W0U4 402 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 CCDC62Q6P9F0 684 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 NBPF11Q86T75 865 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 FNBP4Q8N3X1 1017 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-202ENST00000358808 ARHGEF2Q92974 986 aaKnown RBP11.34□□□□□ -0.59
CLIP1-202ENST00000358808 ZBED4O75132 1171 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 DCUN1D2Q6PH85 259 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 TBC1D9Q6ZT07 1266 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 MCUR1Q96AQ8 359 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 TCEANC2Q96MN5 208 aa11.34□□□□□ -0.59
CLIP1-202ENST00000358808 ARHGEF35A5YM69 484 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 INPP1P49441 399 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 UBL4BQ8N7F7 174 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 SKA2Q8WVK7 121 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-202ENST00000358808 TXNDC9O14530 226 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 PCK1P35558 622 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 FAM193BQ96PV7 902 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-202ENST00000358808 CNPY2Q9Y2B0 182 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 CD19P15391 556 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 GBP1P32455 592 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 HPDP32754 393 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-202ENST00000358808 NFATC2IPQ8NCF5 419 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 CCNL1Q9UK58 526 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-202ENST00000358808 NPHP4O75161 1426 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-202ENST00000358808 YTHDC2Q9H6S0 1430 aaKnown RBP11.33□□□□□ -0.6
CLIP1-202ENST00000358808 UGGT1Q9NYU2 1555 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 ARAP3Q8WWN8 1544 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 ASIC2Q16515 512 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 PPP4R4Q6NUP7 873 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 RBM28Q9NW13 759 aaKnown RBP11.33□□□□□ -0.6
CLIP1-202ENST00000358808 CTNND2Q9UQB3 1225 aa11.33□□□□□ -0.6
CLIP1-202ENST00000358808 TRIM27P14373 513 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 IFRD2Q12894 506 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 HHATQ5VTY9 493 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 SMCR8Q8TEV9 937 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 HVCN1Q96D96 273 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 UTP11Q9Y3A2 253 aaKnown RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 IRS4O14654 1257 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 SPTLC2O15270 562 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 KLHL40Q2TBA0 621 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 LMBR1LQ6UX01 489 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 TEX11Q8IYF3 940 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 NOC4LQ9BVI4 516 aaKnown RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 PPP1R12CQ9BZL4 782 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 DNAJC25Q9H1X3 360 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 HGSO14964 777 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 VWA3BQ502W6 1294 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 LGSNQ5TDP6 509 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 NCAPH2Q6IBW4 605 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 HELBQ8NG08 1087 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 FAM76AQ8TAV0 307 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 TBC1D32Q96NH3 1257 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 PAG1Q9NWQ8 432 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 NLRP1Q9C000 1473 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 KRT3P12035 628 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 KIF11P52732 1056 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 ZSCAN23Q3MJ62 389 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 LRRC43Q8N309 656 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 RBM8AQ9Y5S9 174 aaKnown RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 GOLGA6CA6NDK9 693 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 GOLGA6BA6NDN3 693 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 ZNF853P0CG23 659 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 GOLGA6DP0CG33 693 aa11.32□□□□□ -0.6
CLIP1-202ENST00000358808 IL15P40933 162 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-202ENST00000358808 RNASE9P60153 205 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms