RNA–Protein interactions for RNA: ENST00000345512.7

PTPRU-201, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRU, Length 4,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-201ENST00000345512 SEC31AO94979 1220 aaKnown RBP17.59■□□□□ 0.41
PTPRU-201ENST00000345512 KRT9P35527 623 aa17.59■□□□□ 0.41
PTPRU-201ENST00000345512 CCDC122Q5T0U0 273 aa17.59■□□□□ 0.41
PTPRU-201ENST00000345512 FAM114A1Q8IWE2 563 aa17.59■□□□□ 0.41
PTPRU-201ENST00000345512 CRNKL1Q9BZJ0 848 aaKnown RBP17.59■□□□□ 0.41
PTPRU-201ENST00000345512 TTF2Q9UNY4 1162 aaKnown RBP17.59■□□□□ 0.41
PTPRU-201ENST00000345512 CLCN6P51797 869 aa17.58■□□□□ 0.41
PTPRU-201ENST00000345512 KRT83P78385 493 aa17.58■□□□□ 0.41
PTPRU-201ENST00000345512 ERBB3P21860 1342 aa17.58■□□□□ 0.4
PTPRU-201ENST00000345512 AMPD3Q01432 767 aa17.58■□□□□ 0.4
PTPRU-201ENST00000345512 KMT5BQ4FZB7 885 aa17.58■□□□□ 0.4
PTPRU-201ENST00000345512 CALM1P0DP23 149 aa17.58■□□□□ 0.4
PTPRU-201ENST00000345512 CALM2P0DP24 149 aa17.58■□□□□ 0.4
PTPRU-201ENST00000345512 CALM3P0DP25 149 aa17.58■□□□□ 0.4
PTPRU-201ENST00000345512 RDXP35241 583 aaKnown RBP17.58■□□□□ 0.4
PTPRU-201ENST00000345512 NEK11Q8NG66 645 aa17.58■□□□□ 0.4
PTPRU-201ENST00000345512 CALML4Q96GE6 196 aa17.58■□□□□ 0.4
PTPRU-201ENST00000345512 TAB2Q9NYJ8 693 aa17.58■□□□□ 0.4
PTPRU-201ENST00000345512 VIRMAQ69YN4 1812 aaKnown RBP17.58■□□□□ 0.4
PTPRU-201ENST00000345512 KIF5AQ12840 1032 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 DHX40Q8IX18 779 aaKnown RBP17.57■□□□□ 0.4
PTPRU-201ENST00000345512 LPIN2Q92539 896 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 FGFR1OPO95684 399 aaKnown RBP17.57■□□□□ 0.4
PTPRU-201ENST00000345512 ASIC1P78348 528 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 SPATA5Q8NB90 893 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 STX10O60499 249 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 PPP6R2O75170 966 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 HEATR3Q7Z4Q2 680 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 TSG101Q99816 390 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 SLF1Q9BQI6 1058 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 PIK3AP1Q6ZUJ8 805 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 IFNL3Q8IZI9 196 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 CCDC42Q96M95 316 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 NIP7Q9Y221 180 aaKnown RBP eCLIP17.57■□□□□ 0.4
PTPRU-201ENST00000345512 AXIN2Q9Y2T1 843 aa17.57■□□□□ 0.4
PTPRU-201ENST00000345512 TSPOAP1O95153 1857 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 TUBBP07437 444 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 PDE8AO60658 829 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 TMTC1Q8IUR5 882 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 ANKRD18AQ8IVF6 992 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.56■□□□□ 0.4
PTPRU-201ENST00000345512 BLZF1Q9H2G9 400 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 ZNF287Q9HBT7 754 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 FRMPD1Q5SYB0 1578 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 CIAO1O76071 339 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 TTC38Q5R3I4 469 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 WWC2Q6AWC2 1192 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 CYP26C1Q6V0L0 522 aa17.56■□□□□ 0.4
PTPRU-201ENST00000345512 CALML3P27482 149 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 ZNF654Q8IZM8 581 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 ANKRD7Q92527 254 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 PXDNLA1KZ92 1463 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 TERF2Q15554 542 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 TMEM266Q2M3C6 531 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 DTHD1Q6ZMT9 781 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 RAB34Q9BZG1 259 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 OSBPL5Q9H0X9 879 aaPredicted RBP17.55■□□□□ 0.4
PTPRU-201ENST00000345512 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.55■□□□□ 0.4
PTPRU-201ENST00000345512 GRAMD1CQ8IYS0 662 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 MMRN2Q9H8L6 949 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 ANKIB1Q9P2G1 1089 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 PAK1Q13153 545 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 CCDC40Q4G0X9 1142 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 USPL1Q5W0Q7 1092 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 MYO6Q9UM54 1294 aa17.55■□□□□ 0.4
PTPRU-201ENST00000345512 PHLPP2Q6ZVD8 1323 aa17.54■□□□□ 0.4
PTPRU-201ENST00000345512 PHKA1P46020 1223 aa17.54■□□□□ 0.4
PTPRU-201ENST00000345512 NBPF11Q86T75 865 aa17.54■□□□□ 0.4
PTPRU-201ENST00000345512 VSTM4Q8IW00 320 aa17.54■□□□□ 0.4
PTPRU-201ENST00000345512 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.54■□□□□ 0.4
PTPRU-201ENST00000345512 MED23Q9ULK4 1368 aa17.54■□□□□ 0.4
PTPRU-201ENST00000345512 TACC1O75410 805 aa17.54■□□□□ 0.4
PTPRU-201ENST00000345512 ZSCAN20P17040 1043 aaPredicted RBP17.54■□□□□ 0.4
PTPRU-201ENST00000345512 HLTFQ14527 1009 aaKnown RBP eCLIP17.54■□□□□ 0.4
PTPRU-201ENST00000345512 MACROD2A1Z1Q3 448 aa17.54■□□□□ 0.4
PTPRU-201ENST00000345512 H7C1W4 665 aa17.54■□□□□ 0.4
PTPRU-201ENST00000345512 FCHSD1Q86WN1 690 aa17.54■□□□□ 0.4
PTPRU-201ENST00000345512 FANCBQ8NB91 859 aa17.54■□□□□ 0.4
PTPRU-201ENST00000345512 NAA15Q9BXJ9 866 aaKnown RBP17.54■□□□□ 0.4
PTPRU-201ENST00000345512 CTIFO43310 598 aaKnown RBP17.53■□□□□ 0.4
PTPRU-201ENST00000345512 GREM2Q9H772 168 aa17.53■□□□□ 0.4
PTPRU-201ENST00000345512 WWC3Q9ULE0 1092 aa17.53■□□□□ 0.4
PTPRU-201ENST00000345512 USP8P40818 1118 aa17.53■□□□□ 0.4
PTPRU-201ENST00000345512 CT47A1Q5JQC4 288 aaPredicted RBP17.53■□□□□ 0.4
PTPRU-201ENST00000345512 RBM28Q9NW13 759 aaKnown RBP17.53■□□□□ 0.4
PTPRU-201ENST00000345512 ERLIN2O94905 339 aa17.53■□□□□ 0.4
PTPRU-201ENST00000345512 TUBB2AQ13885 445 aa17.53■□□□□ 0.4
PTPRU-201ENST00000345512 ZSCAN26Q16670 478 aa17.53■□□□□ 0.4
PTPRU-201ENST00000345512 ZBTB38Q8NAP3 1195 aaPredicted RBP17.53■□□□□ 0.4
PTPRU-201ENST00000345512 TUBB2BQ9BVA1 445 aa17.53■□□□□ 0.4
PTPRU-201ENST00000345512 PCCAP05165 728 aaPredicted RBP17.53■□□□□ 0.4
PTPRU-201ENST00000345512 PNMA6AP0CW24 399 aaPredicted RBP17.53■□□□□ 0.4
PTPRU-201ENST00000345512 TBC1D8BQ0IIM8 1120 aa17.53■□□□□ 0.4
PTPRU-201ENST00000345512 KCNB2Q92953 911 aa17.53■□□□□ 0.4
PTPRU-201ENST00000345512 RASSF4Q9H2L5 321 aa17.53■□□□□ 0.4
PTPRU-201ENST00000345512 ERVV-2B6SEH9 535 aa17.52■□□□□ 0.4
PTPRU-201ENST00000345512 CCZ1BP86790 482 aa17.52■□□□□ 0.4
PTPRU-201ENST00000345512 CCZ1P86791 482 aaPredicted RBP17.52■□□□□ 0.4
PTPRU-201ENST00000345512 UBE3CQ15386 1083 aa17.52■□□□□ 0.4
PTPRU-201ENST00000345512 TRIML1Q8N9V2 468 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms