RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 HDAC6Q9UBN7 1215 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 SERTAD1Q9UHV2 236 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 KDM4FA0A1W2PPD8 638 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 POLR2DO15514 142 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 RNMTO43148 476 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 PPFIA4O75335 1185 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 DDX58O95786 925 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 CASP14P31944 242 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 EXOC5O00471 708 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 FOXP2O15409 715 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 USP49Q70CQ1 688 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 RNF225M0QZC1 329 aaPredicted RBP15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 CCT5P48643 541 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 FKBP4Q02790 459 aaKnown RBP eCLIP15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 DNAJC21Q5F1R6 531 aaKnown RBP15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 SMYD4Q8IYR2 804 aaPredicted RBP15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 AFAP1L1Q8TED9 768 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 HELLSQ9NRZ9 838 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 SRGAP2O75044 1071 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 ATF3P18847 181 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 FXR1P51114 621 aaKnown RBP eCLIP15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 NEXNQ0ZGT2 675 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 KRT28Q7Z3Y7 464 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 MYL10Q9BUA6 226 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 DDX21Q9NR30 783 aaKnown RBP eCLIP15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 AXIN2Q9Y2T1 843 aa15.3■□□□□ 0.04
CCDC88C-201ENST00000331194 FGAP02671 866 aa15.29■□□□□ 0.04
CCDC88C-201ENST00000331194 WASHC4Q2M389 1173 aa15.29■□□□□ 0.04
CCDC88C-201ENST00000331194 SAMD1Q6SPF0 538 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-201ENST00000331194 PRPF6O94906 941 aaKnown RBP15.29■□□□□ 0.04
CCDC88C-201ENST00000331194 A1BGP04217 495 aa15.29■□□□□ 0.04
CCDC88C-201ENST00000331194 POSTNQ15063 836 aa15.29■□□□□ 0.04
CCDC88C-201ENST00000331194 PPFIBP1Q86W92 1011 aa15.29■□□□□ 0.04
CCDC88C-201ENST00000331194 TMEM94Q12767 1356 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 LMBR1LQ6UX01 489 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 MMS22LQ6ZRQ5 1243 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 ARHGEF25Q86VW2 580 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 GGCXP38435 758 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 AKAP4Q5JQC9 854 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 TTC39AQ5SRH9 613 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 EFCAB13Q8IY85 973 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 ZNF622Q969S3 477 aaKnown RBP eCLIP15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 ZNF594Q96JF6 807 aaPredicted RBP15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 SLF1Q9BQI6 1058 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 POTEB2H3BUK9 544 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 PPP6R2O75170 966 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 GCP02774 474 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 APTXQ7Z2E3 356 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 CAPZA3Q96KX2 299 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 NAPGQ99747 312 aaPredicted RBP15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 KAT14Q9H8E8 782 aa15.28■□□□□ 0.04
CCDC88C-201ENST00000331194 ZNF335Q9H4Z2 1342 aaPredicted RBP15.27■□□□□ 0.04
CCDC88C-201ENST00000331194 RNF113AO15541 343 aaKnown RBP15.27■□□□□ 0.04
CCDC88C-201ENST00000331194 MYBL2P10244 700 aa15.27■□□□□ 0.04
CCDC88C-201ENST00000331194 CCT6AP40227 531 aaKnown RBP15.27■□□□□ 0.04
CCDC88C-201ENST00000331194 ERVK-24P63145 666 aa15.27■□□□□ 0.04
CCDC88C-201ENST00000331194 MICU3Q86XE3 530 aa15.27■□□□□ 0.04
CCDC88C-201ENST00000331194 ENOX1Q8TC92 643 aaKnown RBP15.27■□□□□ 0.04
CCDC88C-201ENST00000331194 PANX2Q96RD6 677 aa15.27■□□□□ 0.04
CCDC88C-201ENST00000331194 POLD4Q9HCU8 107 aa15.27■□□□□ 0.04
CCDC88C-201ENST00000331194 PIK3C2AO00443 1686 aa15.27■□□□□ 0.04
CCDC88C-201ENST00000331194 A0A1B0GTH6 734 aa15.27■□□□□ 0.03
CCDC88C-201ENST00000331194 CD44P16070 742 aaKnown RBP15.27■□□□□ 0.03
CCDC88C-201ENST00000331194 MCTP2Q6DN12 878 aa15.27■□□□□ 0.03
CCDC88C-201ENST00000331194 RASGRP2Q7LDG7 609 aa15.27■□□□□ 0.03
CCDC88C-201ENST00000331194 NUTM2AQ8IVF1 878 aaPredicted RBP15.27■□□□□ 0.03
CCDC88C-201ENST00000331194 MB21D2Q8IYB1 491 aaPredicted RBP15.27■□□□□ 0.03
CCDC88C-201ENST00000331194 INCENPQ9NQS7 918 aa15.27■□□□□ 0.03
CCDC88C-201ENST00000331194 HOOK1Q9UJC3 728 aaKnown RBP15.27■□□□□ 0.03
CCDC88C-201ENST00000331194 A0A087WUV0 522 aaPredicted RBP15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 A0A087WZG4 1122 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 IFIT1P09914 478 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 MNAT1P51948 309 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 MRPS25P82663 173 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 C1orf141Q5JVX7 400 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 JMYQ8N9B5 988 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 SMARCC1Q92922 1105 aaPredicted RBP15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 MED4Q9NPJ6 270 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 HPCAL4Q9UM19 191 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 MYO6Q9UM54 1294 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 GUCA1BQ9UMX6 200 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 SAMM50Q9Y512 469 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 MYH8P13535 1937 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 ERLIN2O94905 339 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 GYPCP04921 128 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 ARHGAP25P42331 645 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 AFMP43652 599 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 LRRC24Q50LG9 513 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 CCDC82Q8N4S0 544 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 ADAMTSL3P82987 1691 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 TOPAZ1Q8N9V7 1692 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 GOLGB1Q14789 3259 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 MORC3Q14149 939 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 KCNV1Q6PIU1 500 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 MMS19Q96T76 1030 aa15.26■□□□□ 0.03
CCDC88C-201ENST00000331194 KDM3BQ7LBC6 1761 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 CDHR2Q9BYE9 1310 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 ZC3H4Q9UPT8 1303 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 MFAP3LO75121 409 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 HNRNPH1P31943 449 aaKnown RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms