RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 SLC20A2Q08357 652 aa17.89■□□□□ 0.46
SHROOM1-201ENST00000319854 AKNAD1Q5T1N1 836 aa17.89■□□□□ 0.46
SHROOM1-201ENST00000319854 NEK11Q8NG66 645 aa17.89■□□□□ 0.46
SHROOM1-201ENST00000319854 NACAP1Q9BZK3 213 aa17.89■□□□□ 0.46
SHROOM1-201ENST00000319854 DOT1LQ8TEK3 1739 aa17.89■□□□□ 0.45
SHROOM1-201ENST00000319854 POLR3GO15318 223 aaPredicted RBP17.89■□□□□ 0.45
SHROOM1-201ENST00000319854 TRIM29Q14134 588 aa17.89■□□□□ 0.45
SHROOM1-201ENST00000319854 ZNF512BQ96KM6 892 aaPredicted RBP17.89■□□□□ 0.45
SHROOM1-201ENST00000319854 CDC5LQ99459 802 aaKnown RBP17.89■□□□□ 0.45
SHROOM1-201ENST00000319854 L2HGDHQ9H9P8 463 aa17.89■□□□□ 0.45
SHROOM1-201ENST00000319854 CCDC93Q567U6 631 aa17.89■□□□□ 0.45
SHROOM1-201ENST00000319854 AOPEPQ8N6M6 819 aa17.89■□□□□ 0.45
SHROOM1-201ENST00000319854 MYH14Q7Z406 1995 aaKnown RBP17.89■□□□□ 0.45
SHROOM1-201ENST00000319854 GNPATO15228 680 aa17.88■□□□□ 0.45
SHROOM1-201ENST00000319854 ARHGAP29Q52LW3 1261 aa17.88■□□□□ 0.45
SHROOM1-201ENST00000319854 ANO1Q5XXA6 986 aa17.88■□□□□ 0.45
SHROOM1-201ENST00000319854 CDCA7Q9BWT1 371 aaPredicted RBP17.88■□□□□ 0.45
SHROOM1-201ENST00000319854 RTEL1Q9NZ71 1219 aa17.88■□□□□ 0.45
SHROOM1-201ENST00000319854 FEZ2Q9UHY8 353 aaPredicted RBP17.88■□□□□ 0.45
SHROOM1-201ENST00000319854 BAZ2BQ9UIF8 2168 aaKnown RBP17.88■□□□□ 0.45
SHROOM1-201ENST00000319854 WDHD1O75717 1129 aaPredicted RBP17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 ENGASEQ8NFI3 743 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 PPP1R13BQ96KQ4 1090 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 ZCCHC17Q9NP64 241 aaKnown RBP17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 COL14A1Q05707 1796 aaKnown RBP17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 RAD51AP2Q09MP3 1159 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 WTAPQ15007 396 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 STX1AQ16623 288 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 ABCC12Q96J65 1359 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 TAF1P21675 1872 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 ERICH2A1L162 156 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 ST5P78524 1137 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 ADALQ6DHV7 355 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 AMIGO3Q86WK7 504 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 NBPF5PQ86XG9 351 aaPredicted RBP17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 FAM217BQ9NTX9 383 aaPredicted RBP17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 MTMR7Q9Y216 660 aa17.87■□□□□ 0.45
SHROOM1-201ENST00000319854 BTBD18B2RXH4 712 aa17.86■□□□□ 0.45
SHROOM1-201ENST00000319854 SEC31AO94979 1220 aaKnown RBP17.86■□□□□ 0.45
SHROOM1-201ENST00000319854 DPCR1Q3MIW9 517 aa17.86■□□□□ 0.45
SHROOM1-201ENST00000319854 FMR1NBQ8N0W7 255 aaPredicted RBP17.86■□□□□ 0.45
SHROOM1-201ENST00000319854 UBAC1Q9BSL1 405 aa17.86■□□□□ 0.45
SHROOM1-201ENST00000319854 MYH3P11055 1940 aa17.86■□□□□ 0.45
SHROOM1-201ENST00000319854 MAGEB6P1A0A0J9YX57 407 aa17.86■□□□□ 0.45
SHROOM1-201ENST00000319854 TICAM2Q86XR7 235 aa17.86■□□□□ 0.45
SHROOM1-201ENST00000319854 MINPP1Q9UNW1 487 aa17.86■□□□□ 0.45
SHROOM1-201ENST00000319854 COL16A1Q07092 1604 aaPredicted RBP17.86■□□□□ 0.45
SHROOM1-201ENST00000319854 COL4A1P02462 1669 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 ZRANB2O95218 330 aaKnown RBP eCLIP17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 SSRP1Q08945 709 aaKnown RBP17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 CAVIN4Q5BKX8 364 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 KCNG4Q8TDN1 519 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 TMEM87BQ96K49 555 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 EPC1Q9H2F5 836 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 CDKL5O76039 1030 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 ZNF202O95125 648 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 PFKFB1P16118 471 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 HSP90AA4PQ58FG1 418 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 ARMCX5Q6P1M9 558 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 KCND1Q9NSA2 647 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 THRAP3Q9Y2W1 955 aaKnown RBP17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 MROH7-TTC4A0A0A0MT08 1334 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 CAVIN2O95810 425 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 PPARAQ07869 468 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 PTPN21Q16825 1174 aa17.85■□□□□ 0.45
SHROOM1-201ENST00000319854 NR5A1Q13285 461 aa17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 SART3Q15020 963 aaKnown RBP17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 RTN1Q16799 776 aa17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 CERS3Q8IU89 383 aa17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 FBXL16Q8N461 479 aa17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 SETDB2Q96T68 719 aa17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 AATFQ9NY61 560 aaKnown RBP eCLIP17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 FANCGO15287 622 aa17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 NTRK3Q16288 839 aa17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 BRAPQ7Z569 592 aa17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 SMARCC1Q92922 1105 aaPredicted RBP17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 GPR101Q96P66 508 aaPredicted RBP17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 GNL3LQ9NVN8 582 aaKnown RBP17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 SPEF2Q9C093 1822 aa17.84■□□□□ 0.45
SHROOM1-201ENST00000319854 ZPR1O75312 459 aa17.83■□□□□ 0.45
SHROOM1-201ENST00000319854 SLC3A2P08195 630 aaKnown RBP17.83■□□□□ 0.45
SHROOM1-201ENST00000319854 FAM193AP78312 1265 aa17.83■□□□□ 0.45
SHROOM1-201ENST00000319854 ANO10Q9NW15 660 aa17.83■□□□□ 0.45
SHROOM1-201ENST00000319854 UBAP1LF5GYI3 381 aa17.83■□□□□ 0.44
SHROOM1-201ENST00000319854 CEP57L1Q8IYX8 460 aa17.83■□□□□ 0.44
SHROOM1-201ENST00000319854 PDILTQ8N807 584 aa17.83■□□□□ 0.44
SHROOM1-201ENST00000319854 FAM84BQ96KN1 310 aaPredicted RBP17.83■□□□□ 0.44
SHROOM1-201ENST00000319854 AK7Q96M32 723 aa17.83■□□□□ 0.44
SHROOM1-201ENST00000319854 KRT23Q9C075 422 aa17.83■□□□□ 0.44
SHROOM1-201ENST00000319854 POLR3EQ9NVU0 708 aa17.83■□□□□ 0.44
SHROOM1-201ENST00000319854 MYH7P12883 1935 aa17.83■□□□□ 0.44
SHROOM1-201ENST00000319854 TXNRD3Q86VQ6 643 aa17.83■□□□□ 0.44
SHROOM1-201ENST00000319854 SMARCE1Q969G3 411 aa17.83■□□□□ 0.44
SHROOM1-201ENST00000319854 CTAGE5O15320 804 aa17.82■□□□□ 0.44
SHROOM1-201ENST00000319854 NMT2O60551 498 aa17.82■□□□□ 0.44
SHROOM1-201ENST00000319854 PRDX5P30044 214 aa17.82■□□□□ 0.44
SHROOM1-201ENST00000319854 DIS3L2Q8IYB7 885 aaKnown RBP17.82■□□□□ 0.44
SHROOM1-201ENST00000319854 OSBPL5Q9H0X9 879 aaPredicted RBP17.82■□□□□ 0.44
SHROOM1-201ENST00000319854 TNKSO95271 1327 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms