RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 M0R2C6 588 aa13.19□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 TBC1D12O60347 775 aa13.19□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 VGLL4Q14135 290 aa13.19□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 ZMYM1Q5SVZ6 1142 aa13.19□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 CLMNQ96JQ2 1002 aa13.19□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 DCP1AQ9NPI6 582 aaPredicted RBP13.19□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 AOC2O75106 756 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 APPP05067 770 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 ZBTB48P10074 688 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 INPP5BP32019 993 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 MAP2K2P36507 400 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 TDO2P48775 406 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 MFAP1P55081 439 aaKnown RBP13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 MKRN3Q13064 507 aaKnown RBP13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 FOXP4Q8IVH2 680 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 OPTNQ96CV9 577 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 STRBPQ96SI9 672 aaKnown RBP13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 BEGAINQ9BUH8 593 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 NACAP1Q9BZK3 213 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 PICK1Q9NRD5 415 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 HELLSQ9NRZ9 838 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 ARPP21Q9UBL0 812 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 LAMA4Q16363 1823 aa13.18□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 FAM196BA6NMK8 535 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 FAM155AB1AL88 458 aaPredicted RBP13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 PRKAB2O43741 272 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 GSPT1P15170 499 aaKnown RBP13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 SDSP20132 328 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 MAP2K1Q02750 393 aaPredicted RBP13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 NMIQ13287 307 aaPredicted RBP13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 MCMDC2Q4G0Z9 681 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 NOL9Q5SY16 702 aaKnown RBP13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 JMYQ8N9B5 988 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 ZKSCAN4Q969J2 545 aaPredicted RBP13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 OTUD5Q96G74 571 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 WNK4Q96J92 1243 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 SEC62Q99442 399 aaKnown RBP13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 EHD4Q9H223 541 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 SERPINB13Q9UIV8 391 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 ZNF112Q9UJU3 913 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 SNCAIPQ9Y6H5 919 aa13.17□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 A0A0D9SFI3 127 aa13.16□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 SPDYE5A6NIY4 337 aa13.16□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 CTNND1O60716 968 aaKnown RBP13.16□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 MAP3K10Q02779 954 aa13.16□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 SREBF2Q12772 1141 aa13.16□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 SPRYD7Q5W111 196 aa13.16□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 GIMAP6Q6P9H5 292 aa13.16□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 ERO1BQ86YB8 467 aa13.16□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 REM2Q8IYK8 340 aaPredicted RBP13.16□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 SCYL3Q8IZE3 742 aa13.16□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 MANSC4A6NHS7 340 aaPredicted RBP13.15□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 PHF20L1A8MW92 1017 aa13.15□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 PATL2C9JE40 543 aaKnown RBP13.15□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 KIF23Q02241 960 aaPredicted RBP13.15□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 CCDC129Q6ZRS4 1044 aa13.15□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 FAM227BQ96M60 508 aa13.15□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 NAPBQ9H115 298 aa13.15□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 SWAP70Q9UH65 585 aa13.15□□□□□ -0.3
CSPG4P1Y-201ENST00000306641 CCDC171Q6TFL3 1326 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 GSG1L2A8MUP6 293 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 USP17L12C9JPN9 530 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 USP17L21D6R901 530 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 SLURP2P0DP57 97 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CAP2P40123 477 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 PLCD1P51178 756 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 PPATQ06203 517 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 PPIL2Q13356 520 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CWC27Q6UX04 472 aaKnown RBP13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 METTL16Q86W50 562 aaKnown RBP13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 RUFY2Q8WXA3 655 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 DNAJC18Q9H819 358 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 TAOK2Q9UL54 1235 aa13.14□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 LOC285556D6RIA3 1793 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 MINDY4BA8MYZ0 360 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 GDF11O95390 407 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 SLC3A2P08195 630 aaKnown RBP13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ASNSP08243 561 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 HSPA1AP0DMV8 641 aaKnown RBP13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 HSPA1BP0DMV9 641 aaKnown RBP13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CYP2D6P10635 497 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 GTF2A2P52657 109 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CERKLQ49MI3 558 aaPredicted RBP13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 C12orf60Q5U649 245 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CTR9Q6PD62 1173 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 IFNL3Q8IZI9 196 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CNKSR2Q8WXI2 1034 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 TBC1D2Q9BYX2 928 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 AS3MTQ9HBK9 375 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 EPB41L4AQ9HCS5 686 aaPredicted RBP13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CABP5Q9NP86 173 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 GINM1Q9NU53 330 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 MYH4Q9Y623 1939 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 RAD50Q92878 1312 aa13.13□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ROBO3Q96MS0 1386 aa13.12□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 PTPRAP18433 802 aa13.12□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 GJA5P36382 358 aa13.12□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 INHBEP58166 350 aa13.12□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 SNAPC2Q13487 334 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms