RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 VWA3AA6NCI4 1184 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 PPFIA1Q13136 1202 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 LLPHQ9BRT6 129 aaKnown RBP10.36□□□□□ -0.75
CUX1-201ENST00000292535 KNTC1P50748 2209 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 NAA25Q14CX7 972 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 PROCA1Q8NCQ7 364 aaPredicted RBP10.36□□□□□ -0.75
CUX1-201ENST00000292535 RNF113AO15541 343 aaKnown RBP10.36□□□□□ -0.75
CUX1-201ENST00000292535 ATF7P17544 494 aaPredicted RBP10.36□□□□□ -0.75
CUX1-201ENST00000292535 HVCN1Q96D96 273 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 NUCKS1Q9H1E3 243 aaKnown RBP10.36□□□□□ -0.75
CUX1-201ENST00000292535 PPFIA3O75145 1194 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 RUFY3Q7L099 469 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 FCHSD1Q86WN1 690 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 PRPF6O94906 941 aaKnown RBP10.35□□□□□ -0.75
CUX1-201ENST00000292535 TRPC6Q9Y210 931 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 DENND4BO75064 1496 aaPredicted RBP10.35□□□□□ -0.75
CUX1-201ENST00000292535 RBSNQ9H1K0 784 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 MRPL44Q9H9J2 332 aaKnown RBP10.35□□□□□ -0.75
CUX1-201ENST00000292535 TCIRG1Q13488 830 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 ATP8B2P98198 1209 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 WDR46O15213 610 aaKnown RBP10.35□□□□□ -0.75
CUX1-201ENST00000292535 SLC9C1Q4G0N8 1177 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 TTF2Q9UNY4 1162 aaKnown RBP10.35□□□□□ -0.75
CUX1-201ENST00000292535 TEKT1Q969V4 418 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 LZTFL1Q9NQ48 299 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 SYNRGQ9UMZ2 1314 aa10.35□□□□□ -0.75
CUX1-201ENST00000292535 PDE1AP54750 535 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 HS1BP3Q53T59 392 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 RPS6KA2Q15349 733 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 VPS18Q9P253 973 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 FAM8A1Q9UBU6 413 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 PARP2Q9UGN5 583 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 CHMP2AO43633 222 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 STMN1P16949 149 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 ARHGAP25P42331 645 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 GOLGA5Q8TBA6 731 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 C14orf93Q9H972 538 aaKnown RBP10.34□□□□□ -0.75
CUX1-201ENST00000292535 IFNKQ9P0W0 207 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 GOLGA8CPA6NN73 597 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 GNA14O95837 355 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 CCDC186Q7Z3E2 898 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 HELLSQ9NRZ9 838 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 DNM3Q9UQ16 869 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 RABGAP1Q9Y3P9 1069 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 ZBED4O75132 1171 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 TBC1D8BQ0IIM8 1120 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 DIDO1Q9BTC0 2240 aaKnown RBP10.34□□□□□ -0.75
CUX1-201ENST00000292535 RBBP5Q15291 538 aaKnown RBP10.34□□□□□ -0.75
CUX1-201ENST00000292535 LMBR1LQ6UX01 489 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 SUPT20HQ8NEM7 779 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 LINS1Q8NG48 757 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 UBAP1LF5GYI3 381 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 H0YCG3 227 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 RHOXF2BP0C7M4 288 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 HSPA8P11142 646 aaKnown RBP10.34□□□□□ -0.75
CUX1-201ENST00000292535 KRT3P12035 628 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 RHOXF2Q9BQY4 288 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 PTPDC1A2A3K4 754 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 KDM5BQ9UGL1 1544 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 ZFYVE9O95405 1425 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 KDM3AQ9Y4C1 1321 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 KIF22Q14807 665 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 LETM2Q2VYF4 491 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 TYW5A2RUC4 315 aaKnown RBP10.34□□□□□ -0.75
CUX1-201ENST00000292535 ARHGEF2Q92974 986 aaKnown RBP10.34□□□□□ -0.75
CUX1-201ENST00000292535 NAPGQ99747 312 aaPredicted RBP10.34□□□□□ -0.75
CUX1-201ENST00000292535 PRR16Q569H4 304 aa10.34□□□□□ -0.75
CUX1-201ENST00000292535 PDZD4Q76G19 769 aaPredicted RBP10.34□□□□□ -0.75
CUX1-201ENST00000292535 SLC1A4P43007 532 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 SND1Q7KZF4 910 aaKnown RBP eCLIP10.33□□□□□ -0.76
CUX1-201ENST00000292535 DNAJC13O75165 2243 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 CUTAO60888 179 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.33□□□□□ -0.76
CUX1-201ENST00000292535 IRX3P78415 501 aaPredicted RBP10.33□□□□□ -0.76
CUX1-201ENST00000292535 MTMR3Q13615 1198 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 MAIP1Q8WWC4 291 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 ANGEL1Q9UNK9 670 aaKnown RBP10.33□□□□□ -0.76
CUX1-201ENST00000292535 BUB1BO60566 1050 aaPredicted RBP10.33□□□□□ -0.76
CUX1-201ENST00000292535 N4BP1O75113 896 aaKnown RBP10.33□□□□□ -0.76
CUX1-201ENST00000292535 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.33□□□□□ -0.76
CUX1-201ENST00000292535 GJA3Q9Y6H8 435 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 TLDC2A0PJX2 215 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 IRX5P78411 483 aaPredicted RBP10.33□□□□□ -0.76
CUX1-201ENST00000292535 PAK1Q13153 545 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 MAP3K21Q5TCX8 1036 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 TBC1D22AQ8WUA7 517 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 NSFL1CQ9UNZ2 370 aaKnown RBP10.33□□□□□ -0.76
CUX1-201ENST00000292535 TNRQ92752 1358 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 AK2P54819 239 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 IWS1Q96ST2 819 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 GGA1Q9UJY5 639 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 MAP3K5Q99683 1374 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 MIGA1Q8NAN2 632 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 NT5C3AQ9H0P0 336 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 C11orf95C9JLR9 678 aaPredicted RBP10.33□□□□□ -0.76
CUX1-201ENST00000292535 SPOUT1Q5T280 376 aaKnown RBP10.33□□□□□ -0.76
CUX1-201ENST00000292535 SECISBP2LQ93073 1101 aaKnown RBP10.33□□□□□ -0.76
CUX1-201ENST00000292535 AOX1Q06278 1338 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 ARHGEF6Q15052 776 aa10.33□□□□□ -0.76
CUX1-201ENST00000292535 ANKFY1Q9P2R3 1169 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms