RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 DCAF8Q5TAQ9 597 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 FAM173BQ6P4H8 233 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 C15orf52Q6ZUT6 534 aaKnown RBP11.96□□□□□ -0.5
UPF3B-201ENST00000276201 ATG9AQ7Z3C6 839 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 VGLL2Q8N8G2 317 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 FAM227BQ96M60 508 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 ZNF396Q96N95 335 aaPredicted RBP11.96□□□□□ -0.5
UPF3B-201ENST00000276201 TAF1DQ9H5J8 278 aaPredicted RBP11.96□□□□□ -0.5
UPF3B-201ENST00000276201 TFIP11Q9UBB9 837 aaKnown RBP11.96□□□□□ -0.5
UPF3B-201ENST00000276201 HACL1Q9UJ83 578 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 PA2G4Q9UQ80 394 aaKnown RBP11.96□□□□□ -0.5
UPF3B-201ENST00000276201 U3KPZ7 1027 aaPredicted RBP11.96□□□□□ -0.5
UPF3B-201ENST00000276201 PSME4Q14997 1843 aa11.95□□□□□ -0.5
UPF3B-201ENST00000276201 PFKFB2O60825 505 aa11.95□□□□□ -0.5
UPF3B-201ENST00000276201 TOMM70O94826 608 aa11.95□□□□□ -0.5
UPF3B-201ENST00000276201 C1QTNF8P60827 252 aa11.95□□□□□ -0.5
UPF3B-201ENST00000276201 FAM160A1Q05DH4 1040 aa11.95□□□□□ -0.5
UPF3B-201ENST00000276201 SNW1Q13573 536 aaKnown RBP11.95□□□□□ -0.5
UPF3B-201ENST00000276201 FBXO38Q6PIJ6 1188 aa11.95□□□□□ -0.5
UPF3B-201ENST00000276201 C11orf57Q6ZUT1 292 aaPredicted RBP11.95□□□□□ -0.5
UPF3B-201ENST00000276201 AACSQ86V21 672 aa11.95□□□□□ -0.5
UPF3B-201ENST00000276201 CEP57L1Q8IYX8 460 aa11.95□□□□□ -0.5
UPF3B-201ENST00000276201 BRF1Q92994 677 aa11.95□□□□□ -0.5
UPF3B-201ENST00000276201 SIL1Q9H173 461 aa11.95□□□□□ -0.5
UPF3B-201ENST00000276201 A0A0D9SFI3 127 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 HMGB1P09429 215 aaKnown RBP11.94□□□□□ -0.5
UPF3B-201ENST00000276201 AGXT2Q9BYV1 514 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 COA1Q9GZY4 146 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 COPRSQ9NQ92 184 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 ZNF646O15015 1829 aaPredicted RBP11.94□□□□□ -0.5
UPF3B-201ENST00000276201 A0A1W2PQ27 194 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 A0A1W2PQ64 194 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 A0A1W2PQD8 194 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 CIAO1O76071 339 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 SASH1O94885 1247 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 EPHX2P34913 555 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 EPS15P42566 896 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 UBE4AQ14139 1066 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 CCDC73Q6ZRK6 1079 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 PODNQ7Z5L7 613 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 RBM46Q8TBY0 533 aaKnown RBP11.94□□□□□ -0.5
UPF3B-201ENST00000276201 SRRTQ9BXP5 876 aaKnown RBP11.94□□□□□ -0.5
UPF3B-201ENST00000276201 GPRC5DQ9NZD1 345 aa11.94□□□□□ -0.5
UPF3B-201ENST00000276201 USP27XA6NNY8 438 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 VIL1P09327 827 aaKnown RBP11.93□□□□□ -0.5
UPF3B-201ENST00000276201 POTEIP0CG38 1075 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 POTEJP0CG39 1038 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 NAA30Q147X3 362 aaPredicted RBP11.93□□□□□ -0.5
UPF3B-201ENST00000276201 CCAR1Q8IX12 1150 aaKnown RBP11.93□□□□□ -0.5
UPF3B-201ENST00000276201 EAF2Q96CJ1 260 aaPredicted RBP11.93□□□□□ -0.5
UPF3B-201ENST00000276201 TIGD1Q96MW7 591 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 TSPYL1Q9H0U9 437 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 FBXO3Q9UK99 471 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 ZBTB12Q9Y330 459 aaPredicted RBP11.93□□□□□ -0.5
UPF3B-201ENST00000276201 PHLPP2Q6ZVD8 1323 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 BECN2A8MW95 431 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 TULP2O00295 520 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 PDE8BO95263 885 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 LMOD1P29536 600 aaPredicted RBP11.93□□□□□ -0.5
UPF3B-201ENST00000276201 G3BP1Q13283 466 aaKnown RBP eCLIP11.93□□□□□ -0.5
UPF3B-201ENST00000276201 FBXL16Q8N461 479 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 NEK1Q96PY6 1258 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 ADAMTSL1Q8N6G6 1762 aa11.93□□□□□ -0.5
UPF3B-201ENST00000276201 SHTN1A0MZ66 631 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 H3BQV1 296 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 MYO1BO43795 1136 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 KINO60870 393 aaKnown RBP11.92□□□□□ -0.5
UPF3B-201ENST00000276201 TPM1P09493 284 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 ATP5JP18859 108 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 FGD1P98174 961 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 TPRNQ4KMQ1 711 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 IFFO2Q5TF58 517 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 FSD1Q9BTV5 496 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 CD209Q9NNX6 404 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 SALL1Q9NSC2 1324 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 ZNF609O15014 1411 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 USP17L3A6NCW0 530 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 USP17L4A6NCW7 530 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 NRDCO43847 1150 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 FGFR2P21802 821 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 CYP2C19P33261 490 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 ELF2Q15723 593 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 USP17L1Q7RTZ2 530 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 ZNF804AQ7Z570 1209 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 FILIP1Q7Z7B0 1213 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 NBPF11Q86T75 865 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 TMEM51Q9NW97 253 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 ZNF446Q9NWS9 450 aa11.92□□□□□ -0.5
UPF3B-201ENST00000276201 RPS12P25398 132 aaKnown RBP11.91□□□□□ -0.5
UPF3B-201ENST00000276201 IL15P40933 162 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-201ENST00000276201 GYG1P46976 350 aa11.91□□□□□ -0.5
UPF3B-201ENST00000276201 PUM3Q15397 648 aaKnown RBP11.91□□□□□ -0.5
UPF3B-201ENST00000276201 EAPPQ56P03 285 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-201ENST00000276201 RSBN1LQ6PCB5 846 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-201ENST00000276201 FCHSD1Q86WN1 690 aa11.91□□□□□ -0.5
UPF3B-201ENST00000276201 NSUN7Q8NE18 718 aaKnown RBP11.91□□□□□ -0.5
UPF3B-201ENST00000276201 DPF2Q92785 391 aa11.91□□□□□ -0.5
UPF3B-201ENST00000276201 JAK2O60674 1132 aa11.91□□□□□ -0.5
UPF3B-201ENST00000276201 ZRANB2O95218 330 aaKnown RBP eCLIP11.91□□□□□ -0.5
UPF3B-201ENST00000276201 IL1R1P14778 569 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms