RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 BLZF1Q9H2G9 400 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 RABEP2Q9H5N1 569 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 CBX8Q9HC52 389 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 VPS54Q9P1Q0 977 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 SYNRGQ9UMZ2 1314 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 CNNM4Q6P4Q7 775 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 DPP8Q6V1X1 898 aaPredicted RBP12.83□□□□□ -0.36
USP53-201ENST00000274030 ARHGEF35A5YM69 484 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 ATL3Q6DD88 541 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 NSMFQ6X4W1 530 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 LPIN2Q92539 896 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 LRWD1Q9UFC0 647 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 LMTK3Q96Q04 1460 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 EBAG9O00559 213 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 HGSO14964 777 aaPredicted RBP12.82□□□□□ -0.36
USP53-201ENST00000274030 STX10O60499 249 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 IVLP07476 585 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 SH2D4AQ9H788 454 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 ARHGEF10LQ9HCE6 1279 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 CCDC160A6NGH7 325 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 CFBP00751 764 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 INF2Q27J81 1249 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 TUBB4AP04350 444 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 SMTNP53814 917 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 CLSTN2Q9H4D0 955 aa12.82□□□□□ -0.36
USP53-201ENST00000274030 KCNQ3O43525 872 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 PAK1Q13153 545 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 TTC14Q96N46 770 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 NFE2L3Q9Y4A8 694 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 CETN3O15182 167 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 TFAP4Q01664 338 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 LARGE2Q8N3Y3 721 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 PLEKHA4Q9H4M7 779 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 SF3A3Q12874 501 aaKnown RBP eCLIP12.81□□□□□ -0.36
USP53-201ENST00000274030 KIFC2Q96AC6 838 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 TRPM2O94759 1503 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 HAUS3Q68CZ6 603 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 CCDC87Q9NVE4 849 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 CARD6Q9BX69 1037 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 TSGA10Q9BZW7 698 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 TMOD4Q9NZQ9 345 aa12.81□□□□□ -0.36
USP53-201ENST00000274030 NONOQ15233 471 aaKnown RBP eCLIP12.8□□□□□ -0.36
USP53-201ENST00000274030 RDH13Q8NBN7 331 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 WDR66Q8TBY9 1149 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 LLPHQ9BRT6 129 aaKnown RBP12.8□□□□□ -0.36
USP53-201ENST00000274030 GTPBP4Q9BZE4 634 aaKnown RBP12.8□□□□□ -0.36
USP53-201ENST00000274030 SBNO1A3KN83 1393 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 CUTAO60888 179 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 ATP2A2P16615 1042 aaKnown RBP12.8□□□□□ -0.36
USP53-201ENST00000274030 PPP2R5DQ14738 602 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 NBPF11Q86T75 865 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 RNF34Q969K3 372 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 TBX22Q9Y458 520 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 NOP56O00567 594 aaKnown RBP12.8□□□□□ -0.36
USP53-201ENST00000274030 ADCY7P51828 1080 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 TRPC3Q13507 836 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 ASIC2Q16515 512 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 JAKMIP2Q96AA8 810 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 SEC62Q99442 399 aaKnown RBP12.8□□□□□ -0.36
USP53-201ENST00000274030 NAP1L4Q99733 375 aaKnown RBP12.8□□□□□ -0.36
USP53-201ENST00000274030 NAPGQ99747 312 aaPredicted RBP12.8□□□□□ -0.36
USP53-201ENST00000274030 USTQ9Y2C2 406 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 E7EWF7 191 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 VIMP08670 466 aaKnown RBP12.8□□□□□ -0.36
USP53-201ENST00000274030 ARID4AP29374 1257 aaPredicted RBP12.8□□□□□ -0.36
USP53-201ENST00000274030 MYCT1Q8N699 235 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 FAM76AQ8TAV0 307 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 KIFAP3Q92845 792 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 ZMYND15Q9H091 742 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 NOD1Q9Y239 953 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 IFT74Q96LB3 600 aa12.8□□□□□ -0.36
USP53-201ENST00000274030 MAP7D1Q3KQU3 841 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 C8orf74Q6P047 294 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 CYP26C1Q6V0L0 522 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.79□□□□□ -0.36
USP53-201ENST00000274030 HDXQ7Z353 690 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 CCDC26Q8TAB7 109 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 E7EVH7 732 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 STRN3Q13033 797 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 MTX1Q13505 466 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 CALCRLQ16602 461 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 DDX23Q9BUQ8 820 aaKnown RBP12.79□□□□□ -0.36
USP53-201ENST00000274030 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.79□□□□□ -0.36
USP53-201ENST00000274030 GCNT3O95395 438 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 ZNF75DP51815 510 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 EIF4A1P60842 406 aaKnown RBP12.79□□□□□ -0.36
USP53-201ENST00000274030 HS1BP3Q53T59 392 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 CFAP157Q5JU67 520 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 SAMD15Q9P1V8 674 aa12.79□□□□□ -0.36
USP53-201ENST00000274030 UHRF1BP1Q6BDS2 1440 aa12.78□□□□□ -0.36
USP53-201ENST00000274030 ERCC5P28715 1186 aaPredicted RBP12.78□□□□□ -0.36
USP53-201ENST00000274030 POSTNQ15063 836 aa12.78□□□□□ -0.36
USP53-201ENST00000274030 KLHL7Q8IXQ5 586 aa12.78□□□□□ -0.36
USP53-201ENST00000274030 EXOC3O60645 756 aa12.78□□□□□ -0.36
USP53-201ENST00000274030 PNOCQ13519 176 aa12.78□□□□□ -0.36
USP53-201ENST00000274030 SLF1Q9BQI6 1058 aa12.78□□□□□ -0.36
USP53-201ENST00000274030 TRIM7Q9C029 511 aa12.78□□□□□ -0.36
USP53-201ENST00000274030 CALUO43852 315 aaPredicted RBP12.78□□□□□ -0.36
USP53-201ENST00000274030 ME3Q16798 604 aa12.78□□□□□ -0.36
USP53-201ENST00000274030 ARFGAP2Q8N6H7 521 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms