RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 MYH1P12882 1939 aa16.57■□□□□ 0.24
SS18-201ENST00000269137 POLR3DP05423 398 aaPredicted RBP16.56■□□□□ 0.24
SS18-201ENST00000269137 EVX2Q03828 476 aa16.56■□□□□ 0.24
SS18-201ENST00000269137 NLGN2Q8NFZ4 835 aa16.56■□□□□ 0.24
SS18-201ENST00000269137 SMARCC2Q8TAQ2 1214 aa16.56■□□□□ 0.24
SS18-201ENST00000269137 ERICH2A1L162 156 aa16.56■□□□□ 0.24
SS18-201ENST00000269137 GOLGA8BA8MQT2 603 aa16.56■□□□□ 0.24
SS18-201ENST00000269137 PSMD14O00487 310 aa16.56■□□□□ 0.24
SS18-201ENST00000269137 RANBP6O60518 1105 aaKnown RBP16.56■□□□□ 0.24
SS18-201ENST00000269137 UBAC1Q9BSL1 405 aa16.56■□□□□ 0.24
SS18-201ENST00000269137 SAP30BPQ9UHR5 308 aaKnown RBP16.56■□□□□ 0.24
SS18-201ENST00000269137 WDR33Q9C0J8 1336 aaKnown RBP16.55■□□□□ 0.24
SS18-201ENST00000269137 DHX16O60231 1041 aaKnown RBP16.55■□□□□ 0.24
SS18-201ENST00000269137 NPM3O75607 178 aaKnown RBP16.55■□□□□ 0.24
SS18-201ENST00000269137 PRDM1O75626 825 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 RAD17O75943 681 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 PDCP20941 246 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 SYT1P21579 422 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 PLCD1P51178 756 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 CCT2P78371 535 aaKnown RBP16.55■□□□□ 0.24
SS18-201ENST00000269137 WTAPQ15007 396 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 SEC23AQ15436 765 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 APOA5Q6Q788 366 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 IQCA1Q86XH1 822 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 JDP2Q8WYK2 163 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 ZNF287Q9HBT7 754 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 NAP1L2Q9ULW6 460 aaPredicted RBP16.55■□□□□ 0.24
SS18-201ENST00000269137 ADAMTSL1Q8N6G6 1762 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 ECM29Q5VYK3 1845 aa16.55■□□□□ 0.24
SS18-201ENST00000269137 RCAN1P53805 252 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 NSUN7Q8NE18 718 aaKnown RBP16.54■□□□□ 0.24
SS18-201ENST00000269137 AGBL3Q8NEM8 1001 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 ZSCAN10Q96SZ4 725 aaPredicted RBP16.54■□□□□ 0.24
SS18-201ENST00000269137 SENP2Q9HC62 589 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 STX6O43752 255 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 CTDNEP1O95476 244 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 HMGN5P82970 282 aaKnown RBP16.54■□□□□ 0.24
SS18-201ENST00000269137 CXCL9Q07325 125 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 NFXL1Q6ZNB6 911 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 C16orf86Q6ZW13 317 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 TTC6Q86TZ1 520 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 GBP4Q96PP9 640 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 IDI2Q9BXS1 227 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 NCOA5Q9HCD5 579 aaKnown RBP16.54■□□□□ 0.24
SS18-201ENST00000269137 DDX4Q9NQI0 724 aaKnown RBP16.54■□□□□ 0.24
SS18-201ENST00000269137 SLC12A7Q9Y666 1083 aa16.54■□□□□ 0.24
SS18-201ENST00000269137 NID2Q14112 1375 aa16.53■□□□□ 0.24
SS18-201ENST00000269137 TNKSO95271 1327 aa16.53■□□□□ 0.24
SS18-201ENST00000269137 CCDC69A6NI79 296 aa16.53■□□□□ 0.24
SS18-201ENST00000269137 ZBTB43O43298 467 aa16.53■□□□□ 0.24
SS18-201ENST00000269137 JAK2O60674 1132 aa16.53■□□□□ 0.24
SS18-201ENST00000269137 RBM5P52756 815 aaKnown RBP eCLIP16.53■□□□□ 0.24
SS18-201ENST00000269137 ENAHQ8N8S7 591 aaPredicted RBP16.53■□□□□ 0.24
SS18-201ENST00000269137 DYNLL2Q96FJ2 89 aa16.53■□□□□ 0.24
SS18-201ENST00000269137 ZKSCAN3Q9BRR0 538 aa16.53■□□□□ 0.24
SS18-201ENST00000269137 MKNK2Q9HBH9 465 aa16.53■□□□□ 0.24
SS18-201ENST00000269137 MCM4P33991 863 aa16.52■□□□□ 0.24
SS18-201ENST00000269137 CFAP100Q494V2 611 aa16.52■□□□□ 0.24
SS18-201ENST00000269137 SYNE3Q6ZMZ3 975 aa16.52■□□□□ 0.24
SS18-201ENST00000269137 OSBPL5Q9H0X9 879 aaPredicted RBP16.52■□□□□ 0.24
SS18-201ENST00000269137 HDAC9Q9UKV0 1011 aa16.52■□□□□ 0.24
SS18-201ENST00000269137 MMP14P50281 582 aa16.52■□□□□ 0.23
SS18-201ENST00000269137 METAP2P50579 478 aaKnown RBP eCLIP16.52■□□□□ 0.23
SS18-201ENST00000269137 PICALMQ13492 652 aa16.52■□□□□ 0.23
SS18-201ENST00000269137 SLC4A8Q2Y0W8 1093 aa16.52■□□□□ 0.23
SS18-201ENST00000269137 LARP1BQ659C4 914 aaKnown RBP16.52■□□□□ 0.23
SS18-201ENST00000269137 CIAPIN1Q6FI81 312 aa16.52■□□□□ 0.23
SS18-201ENST00000269137 ILDR2Q71H61 639 aa16.52■□□□□ 0.23
SS18-201ENST00000269137 OGFOD1Q8N543 542 aa16.52■□□□□ 0.23
SS18-201ENST00000269137 KIF3AQ9Y496 699 aa16.52■□□□□ 0.23
SS18-201ENST00000269137 PCDHAC2Q9Y5I4 1007 aa16.52■□□□□ 0.23
SS18-201ENST00000269137 PTPDC1A2A3K4 754 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 TSPY2A6NKD2 308 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 ZSCAN22P10073 491 aaPredicted RBP16.51■□□□□ 0.23
SS18-201ENST00000269137 CDK8P49336 464 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 GABPAQ06546 454 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 NFIAQ12857 509 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 TNIP1Q15025 636 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 CCDC178Q5BJE1 867 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 FAM47AQ5JRC9 791 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 TCP11L1Q9NUJ3 509 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 TAOK2Q9UL54 1235 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 MTMR6Q9Y217 621 aa16.51■□□□□ 0.23
SS18-201ENST00000269137 CPLX1O14810 134 aa16.5■□□□□ 0.23
SS18-201ENST00000269137 BAG4O95429 457 aaKnown RBP16.5■□□□□ 0.23
SS18-201ENST00000269137 RASA1P20936 1047 aa16.5■□□□□ 0.23
SS18-201ENST00000269137 TFAP4Q01664 338 aa16.5■□□□□ 0.23
SS18-201ENST00000269137 PPP2R5BQ15173 497 aa16.5■□□□□ 0.23
SS18-201ENST00000269137 IFIT1BQ5T764 474 aaKnown RBP16.5■□□□□ 0.23
SS18-201ENST00000269137 MICU3Q86XE3 530 aa16.5■□□□□ 0.23
SS18-201ENST00000269137 ZNF444Q8N0Y2 327 aaPredicted RBP16.5■□□□□ 0.23
SS18-201ENST00000269137 MTMR14Q8NCE2 650 aa16.5■□□□□ 0.23
SS18-201ENST00000269137 ANKS1AQ92625 1134 aa16.5■□□□□ 0.23
SS18-201ENST00000269137 PRMT6Q96LA8 375 aaPredicted RBP16.5■□□□□ 0.23
SS18-201ENST00000269137 FHDC1Q9C0D6 1143 aaPredicted RBP16.5■□□□□ 0.23
SS18-201ENST00000269137 SPDYE2BA6NHP3 402 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 DTNBO60941 627 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 SPDYE6P0CI01 402 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 CPLX2Q6PUV4 134 aaKnown RBP16.49■□□□□ 0.23
SS18-201ENST00000269137 ZNF654Q8IZM8 581 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms