RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 KANK3Q6NY19 840 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 SPATA5Q8NB90 893 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 LSG1Q9H089 658 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 IQSEC3Q9UPP2 1182 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 SLC12A7Q9Y666 1083 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 CTAGE9A4FU28 777 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 HIBADHP31937 336 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 ZAP70P43403 619 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 SSRP1Q08945 709 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 IKQ13123 557 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 NAA16Q6N069 864 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 GIMAP7Q8NHV1 300 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 LLPHQ9BRT6 129 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 XPO4Q9C0E2 1151 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 SLIT2O94813 1529 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 CCDC196A0A1B0GTZ2 297 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 SEMA3EO15041 775 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 N4BP3O15049 544 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 CASP7P55210 303 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 OAS2P29728 719 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 TUBB4BP68371 445 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 SPA17Q15506 151 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 ERFEQ4G0M1 354 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 ODF2Q5BJF6 829 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 FAM182BQ5T319 152 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 BRAPQ7Z569 592 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 MAP4K1Q92918 833 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 CRNKL1Q9BZJ0 848 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 ELP1O95163 1332 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 SALL3Q9BXA9 1300 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 LTBP4Q8N2S1 1624 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 IFIT3O14879 490 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 RHOXF2BP0C7M4 288 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 CALRP27797 417 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 CHRNDQ07001 517 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 ADCK5Q3MIX3 580 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 TTC31Q49AM3 519 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 HDXQ7Z353 690 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 CERS3Q8IU89 383 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 RHOXF2Q9BQY4 288 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 KRT23Q9C075 422 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 ETF1P62495 437 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 ATG9AQ7Z3C6 839 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 LRP10Q7Z4F1 713 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 A0A0D9SFI3 127 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 UBE3CQ15386 1083 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 ZMYM1Q5SVZ6 1142 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 LINC00116Q8NCU8 138 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 BSDC1Q9NW68 430 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 TCEAL9Q9UHQ7 104 aa13.1□□□□□ -0.31
CLSTN3-201ENST00000266546 PKD1L3Q7Z443 1732 aa13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 TAF5LO75529 589 aa13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 ZSCAN26Q16670 478 aa13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 ZNF569Q5MCW4 686 aa13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 TMED8Q6PL24 325 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 NBPF11Q86T75 865 aa13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 IPO4Q8TEX9 1081 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 EYA3Q99504 573 aa13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 VIRMAQ69YN4 1812 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 ARHGAP6O43182 974 aa13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 PAFAH1B1P43034 410 aa13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 SMC1AQ14683 1233 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 MAGEB6Q8N7X4 407 aa13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 WDR66Q8TBY9 1149 aa13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 NCOA5Q9HCD5 579 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-201ENST00000266546 SF3B3Q15393 1217 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 ZSCAN29Q8IWY8 852 aaPredicted RBP13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 TMTC2Q8N394 836 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 NEK11Q8NG66 645 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 ARHGEF1Q92888 912 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 ZNF622Q969S3 477 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 SLC26A6Q9BXS9 759 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 LEMD3Q9Y2U8 911 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 RIPOR2Q9Y4F9 1068 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 CARMIL3Q8ND23 1372 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 MAGEB6P1A0A0J9YX57 407 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 TUBBP07437 444 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 USP5P45974 858 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 GRM1Q13255 1194 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 MFSD6Q6ZSS7 791 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 DDX41Q9UJV9 622 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 MYO6Q9UM54 1294 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 SLC4A4Q9Y6R1 1079 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 GPAA1O43292 621 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 PRC1O43663 620 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 BAG6P46379 1132 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 TERF2Q15554 542 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 MICALL1Q8N3F8 863 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 CTAGE1Q96RT6 745 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 TANGO6Q9C0B7 1094 aa13.08□□□□□ -0.32
CLSTN3-201ENST00000266546 ZNF202O95125 648 aa13.07□□□□□ -0.32
CLSTN3-201ENST00000266546 ALDH1B1P30837 517 aa13.07□□□□□ -0.32
CLSTN3-201ENST00000266546 CHMP4BP1P59074 171 aa13.07□□□□□ -0.32
CLSTN3-201ENST00000266546 TMEM67Q5HYA8 995 aa13.07□□□□□ -0.32
CLSTN3-201ENST00000266546 RNF187Q5TA31 235 aaPredicted RBP13.07□□□□□ -0.32
CLSTN3-201ENST00000266546 IQCA1Q86XH1 822 aa13.07□□□□□ -0.32
CLSTN3-201ENST00000266546 JADE2Q9NQC1 790 aa13.07□□□□□ -0.32
CLSTN3-201ENST00000266546 GGA1Q9UJY5 639 aa13.07□□□□□ -0.32
CLSTN3-201ENST00000266546 ZSCAN20P17040 1043 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms