RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PARP10Q53GL7 1025 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 RRP12Q5JTH9 1297 aaKnown RBP18.9■□□□□ 0.62
HOXD3-201ENST00000249440 ARMCX5Q6P1M9 558 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 OLFM4Q6UX06 510 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 RTN1Q16799 776 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 KRBA2Q6ZNG9 492 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 ELOA2Q8IYF1 753 aaPredicted RBP18.9■□□□□ 0.62
HOXD3-201ENST00000249440 LCORLQ8N3X6 602 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 RNF41Q9H4P4 317 aaPredicted RBP18.9■□□□□ 0.62
HOXD3-201ENST00000249440 HOOK1Q9UJC3 728 aaKnown RBP18.9■□□□□ 0.62
HOXD3-201ENST00000249440 TACC3Q9Y6A5 838 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 BCORQ6W2J9 1755 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 CBFA2T2O43439 604 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 PRKAB2O43741 272 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 MYO1BO43795 1136 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 BCAMP50895 628 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 LONRF3Q496Y0 759 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 HSD3B7Q9H2F3 369 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 LRP2BPQ9P2M1 347 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 PSDA5PKW4 1024 aaPredicted RBP18.89■□□□□ 0.61
HOXD3-201ENST00000249440 BTBD18B2RXH4 712 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 UBE2Q2LH0YL09 131 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 RCAN1P53805 252 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 VPS72Q15906 364 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 RILPL1Q5EBL4 403 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 METTL16Q86W50 562 aaKnown RBP18.89■□□□□ 0.61
HOXD3-201ENST00000249440 DIS3L2Q8IYB7 885 aaKnown RBP18.89■□□□□ 0.61
HOXD3-201ENST00000249440 FOXP1Q9H334 677 aaPredicted RBP18.89■□□□□ 0.61
HOXD3-201ENST00000249440 CCDC87Q9NVE4 849 aa18.89■□□□□ 0.61
HOXD3-201ENST00000249440 DEXIO95424 95 aa18.88■□□□□ 0.61
HOXD3-201ENST00000249440 UBASH3AP57075 661 aa18.88■□□□□ 0.61
HOXD3-201ENST00000249440 E4F1Q66K89 784 aaPredicted RBP18.88■□□□□ 0.61
HOXD3-201ENST00000249440 INTS5Q6P9B9 1019 aaKnown RBP18.88■□□□□ 0.61
HOXD3-201ENST00000249440 MARCH10Q8NA82 808 aaPredicted RBP18.88■□□□□ 0.61
HOXD3-201ENST00000249440 ZKSCAN3Q9BRR0 538 aa18.88■□□□□ 0.61
HOXD3-201ENST00000249440 CGNQ9P2M7 1197 aaKnown RBP18.88■□□□□ 0.61
HOXD3-201ENST00000249440 DOT1LQ8TEK3 1739 aa18.88■□□□□ 0.61
HOXD3-201ENST00000249440 RTL9Q8NET4 1388 aa18.88■□□□□ 0.61
HOXD3-201ENST00000249440 SERPINC1P01008 464 aa18.88■□□□□ 0.61
HOXD3-201ENST00000249440 ATP1A3P13637 1013 aa18.88■□□□□ 0.61
HOXD3-201ENST00000249440 GUCY1A2P33402 732 aa18.88■□□□□ 0.61
HOXD3-201ENST00000249440 PTF1AQ7RTS3 328 aa18.87■□□□□ 0.61
HOXD3-201ENST00000249440 FEZ1Q99689 392 aa18.87■□□□□ 0.61
HOXD3-201ENST00000249440 PCDHA5Q9Y5H7 936 aa18.87■□□□□ 0.61
HOXD3-201ENST00000249440 TUBB4AP04350 444 aa18.86■□□□□ 0.61
HOXD3-201ENST00000249440 CBX1P83916 185 aa18.86■□□□□ 0.61
HOXD3-201ENST00000249440 CRACR2BQ8N4Y2 399 aaPredicted RBP18.86■□□□□ 0.61
HOXD3-201ENST00000249440 A0A0G2JS52 829 aa18.86■□□□□ 0.61
HOXD3-201ENST00000249440 ATP6V1AP38606 617 aa18.86■□□□□ 0.61
HOXD3-201ENST00000249440 CRKLP46109 303 aaKnown RBP18.86■□□□□ 0.61
HOXD3-201ENST00000249440 TOB1P50616 345 aaPredicted RBP18.86■□□□□ 0.61
HOXD3-201ENST00000249440 STK11IPQ8N1F8 1099 aa18.86■□□□□ 0.61
HOXD3-201ENST00000249440 MIGA1Q8NAN2 632 aa18.86■□□□□ 0.61
HOXD3-201ENST00000249440 FANCBQ8NB91 859 aa18.86■□□□□ 0.61
HOXD3-201ENST00000249440 ACSBG1Q96GR2 724 aa18.86■□□□□ 0.61
HOXD3-201ENST00000249440 UBAC1Q9BSL1 405 aa18.86■□□□□ 0.61
HOXD3-201ENST00000249440 KCNJ14Q9UNX9 436 aa18.86■□□□□ 0.61
HOXD3-201ENST00000249440 PTPREP23469 700 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 CHRNDQ07001 517 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 PPARAQ07869 468 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 CFAP100Q494V2 611 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 FOXP4Q8IVH2 680 aaPredicted RBP18.85■□□□□ 0.61
HOXD3-201ENST00000249440 PPP1R13BQ96KQ4 1090 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 MYH6P13533 1939 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 CCP110O43303 1012 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 CAMTA2O94983 1202 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 PPP2R5BQ15173 497 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 DDB1Q16531 1140 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 ZNF654Q8IZM8 581 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 CCDC82Q8N4S0 544 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 CEP131Q9UPN4 1083 aa18.85■□□□□ 0.61
HOXD3-201ENST00000249440 NIP7Q9Y221 180 aaKnown RBP eCLIP18.85■□□□□ 0.61
HOXD3-201ENST00000249440 MDM2Q00987 491 aaPredicted RBP18.84■□□□□ 0.61
HOXD3-201ENST00000249440 NUP133Q8WUM0 1156 aa18.84■□□□□ 0.61
HOXD3-201ENST00000249440 ERO1AQ96HE7 468 aa18.84■□□□□ 0.61
HOXD3-201ENST00000249440 NOL10Q9BSC4 688 aaKnown RBP18.84■□□□□ 0.61
HOXD3-201ENST00000249440 CDCA7Q9BWT1 371 aaPredicted RBP18.84■□□□□ 0.61
HOXD3-201ENST00000249440 FBXO2Q9UK22 296 aaPredicted RBP18.84■□□□□ 0.61
HOXD3-201ENST00000249440 ZNF215Q9UL58 517 aaPredicted RBP18.84■□□□□ 0.61
HOXD3-201ENST00000249440 NTSR2O95665 410 aa18.84■□□□□ 0.61
HOXD3-201ENST00000249440 CYP7A1P22680 504 aa18.84■□□□□ 0.61
HOXD3-201ENST00000249440 NAA30Q147X3 362 aaPredicted RBP18.84■□□□□ 0.61
HOXD3-201ENST00000249440 SPECC1Q5M775 1068 aa18.84■□□□□ 0.61
HOXD3-201ENST00000249440 ZNF579Q8NAF0 562 aaKnown RBP18.84■□□□□ 0.61
HOXD3-201ENST00000249440 ESR2Q92731 530 aa18.84■□□□□ 0.61
HOXD3-201ENST00000249440 LAMB2P55268 1798 aa18.83■□□□□ 0.61
HOXD3-201ENST00000249440 POSTNQ15063 836 aa18.83■□□□□ 0.61
HOXD3-201ENST00000249440 FANCLQ9NW38 375 aa18.83■□□□□ 0.61
HOXD3-201ENST00000249440 SLU7O95391 586 aaKnown RBP18.83■□□□□ 0.6
HOXD3-201ENST00000249440 VSTM4Q8IW00 320 aa18.83■□□□□ 0.6
HOXD3-201ENST00000249440 CMTR1Q8N1G2 835 aaKnown RBP18.83■□□□□ 0.6
HOXD3-201ENST00000249440 DPF2Q92785 391 aa18.83■□□□□ 0.6
HOXD3-201ENST00000249440 GJD4Q96KN9 370 aaPredicted RBP18.83■□□□□ 0.6
HOXD3-201ENST00000249440 CDC5LQ99459 802 aaKnown RBP18.83■□□□□ 0.6
HOXD3-201ENST00000249440 QTRT2Q9H974 415 aaKnown RBP18.83■□□□□ 0.6
HOXD3-201ENST00000249440 DACH1Q9UI36 760 aa18.83■□□□□ 0.6
HOXD3-201ENST00000249440 ANAPC4Q9UJX5 808 aa18.83■□□□□ 0.6
HOXD3-201ENST00000249440 MINDY4BA8MYZ0 360 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 POLR2DO15514 142 aaKnown RBP18.82■□□□□ 0.6
HOXD3-201ENST00000249440 KCNQ2O43526 872 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms