RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 IQCA1Q86XH1 822 aa16.68■□□□□ 0.26
RTFDC1-201ENST00000023939 ZNF654Q8IZM8 581 aa16.68■□□□□ 0.26
RTFDC1-201ENST00000023939 MYH15Q9Y2K3 1946 aa16.68■□□□□ 0.26
RTFDC1-201ENST00000023939 DIXDC1Q155Q3 683 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 RTN1Q16799 776 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 MFSD14BQ5SR56 506 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 C12orf60Q5U649 245 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 ENAHQ8N8S7 591 aaPredicted RBP16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 SH3RF3Q8TEJ3 882 aaPredicted RBP16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 WASF1Q92558 559 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 ZKSCAN3Q9BRR0 538 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 ANO8Q9HCE9 1232 aaPredicted RBP16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 STK32BQ9NY57 414 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 DLEC1Q9Y238 1755 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 RANBP6O60518 1105 aaKnown RBP16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 RXRAP19793 462 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 PDE4BQ07343 736 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 FANCBQ8NB91 859 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 ALG1Q9BT22 464 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 MYL10Q9BUA6 226 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 TMX4Q9H1E5 349 aaPredicted RBP16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 MCM9Q9NXL9 1143 aa16.67■□□□□ 0.26
RTFDC1-201ENST00000023939 CALM1P0DP23 149 aa16.66■□□□□ 0.26
RTFDC1-201ENST00000023939 CALM2P0DP24 149 aa16.66■□□□□ 0.26
RTFDC1-201ENST00000023939 CALM3P0DP25 149 aa16.66■□□□□ 0.26
RTFDC1-201ENST00000023939 SSRP1Q08945 709 aaKnown RBP16.66■□□□□ 0.26
RTFDC1-201ENST00000023939 EZH2Q15910 746 aaKnown RBP16.66■□□□□ 0.26
RTFDC1-201ENST00000023939 DPP8Q6V1X1 898 aaPredicted RBP16.66■□□□□ 0.26
RTFDC1-201ENST00000023939 ZC3H12CQ9C0D7 883 aaKnown RBP16.66■□□□□ 0.26
RTFDC1-201ENST00000023939 PPFIA3O75145 1194 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 DDAH1O94760 285 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 USP5P45974 858 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 FOSBP53539 338 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 GUCY1B3Q02153 619 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 KIF23Q02241 960 aaPredicted RBP16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 MSL1Q68DK7 614 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 NBPF11Q86T75 865 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 C2CD5Q86YS7 1000 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 STK11IPQ8N1F8 1099 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 PGBD1Q96JS3 809 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 EYA3Q99504 573 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 RTEL1Q9NZ71 1219 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 GOLGA6L4A6NEF3 574 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 CYP2D6P10635 497 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 BTDP43251 543 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 IFIT1BQ5T764 474 aaKnown RBP16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 AMOTL1Q8IY63 956 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 TRIM22Q8IYM9 498 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 CRACR2BQ8N4Y2 399 aaPredicted RBP16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 ANKS1AQ92625 1134 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 PHKBQ93100 1093 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 USP28Q96RU2 1077 aa16.65■□□□□ 0.26
RTFDC1-201ENST00000023939 MYH2Q9UKX2 1941 aa16.64■□□□□ 0.26
RTFDC1-201ENST00000023939 H0YIN7 160 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 PRDM1O75626 825 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 USP17L8P0C7I0 530 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 NASPP49321 788 aaPredicted RBP16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 RHBDL3P58872 404 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 EN1Q05925 392 aaPredicted RBP16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 KRT40Q6A162 431 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 OTUD7BQ6GQQ9 843 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 CATIPQ7Z7H3 387 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 CCDC144CPQ8IYA2 1237 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 PANK2Q9BZ23 570 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 RBSNQ9H1K0 784 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 TSPY26PQ9H489 355 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 POLR3EQ9NVU0 708 aa16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 RBM28Q9NW13 759 aaKnown RBP16.64■□□□□ 0.25
RTFDC1-201ENST00000023939 GTF2IP78347 998 aa16.63■□□□□ 0.25
RTFDC1-201ENST00000023939 TROAPQ12815 778 aa16.63■□□□□ 0.25
RTFDC1-201ENST00000023939 CCDC178Q5BJE1 867 aa16.63■□□□□ 0.25
RTFDC1-201ENST00000023939 SLC26A6Q9BXS9 759 aa16.63■□□□□ 0.25
RTFDC1-201ENST00000023939 RNF26Q9BY78 433 aaPredicted RBP16.63■□□□□ 0.25
RTFDC1-201ENST00000023939 DDX19AQ9NUU7 478 aaKnown RBP16.63■□□□□ 0.25
RTFDC1-201ENST00000023939 DDX60LQ5H9U9 1706 aaKnown RBP16.63■□□□□ 0.25
RTFDC1-201ENST00000023939 NAV1Q8NEY1 1877 aa16.63■□□□□ 0.25
RTFDC1-201ENST00000023939 DEXIO95424 95 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 YEATS4O95619 227 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 U2AF2P26368 475 aaKnown RBP eCLIP16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 EVX2Q03828 476 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 TRIM29Q14134 588 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 MYSM1Q5VVJ2 828 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 TGFBRAP1Q8WUH2 860 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 CNKSR1Q969H4 720 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 TCP11L1Q9NUJ3 509 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 ECM29Q5VYK3 1845 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 RIMBP2O15034 1052 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 LIG1P18858 919 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 FUT2Q10981 343 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 DGKHQ86XP1 1220 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 ZNF622Q969S3 477 aaKnown RBP eCLIP16.62■□□□□ 0.257e-9■□□□□ 9.4
RTFDC1-201ENST00000023939 AIFM3Q96NN9 605 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 ZNF287Q9HBT7 754 aa16.62■□□□□ 0.25
RTFDC1-201ENST00000023939 KIF28PB7ZC32 967 aa16.61■□□□□ 0.25
RTFDC1-201ENST00000023939 FKBP1AP62942 108 aaKnown RBP16.61■□□□□ 0.25
RTFDC1-201ENST00000023939 OLFM4Q6UX06 510 aa16.61■□□□□ 0.25
RTFDC1-201ENST00000023939 PODNQ7Z5L7 613 aa16.61■□□□□ 0.25
RTFDC1-201ENST00000023939 TEX11Q8IYF3 940 aa16.61■□□□□ 0.25
RTFDC1-201ENST00000023939 NUP133Q8WUM0 1156 aa16.61■□□□□ 0.25
RTFDC1-201ENST00000023939 MAP3K14Q99558 947 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms