RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 RIC1Q4ADV7 1423 aa16.06■□□□□ 0.16
USH1C-201ENST00000005226 TUBB4AP04350 444 aa16.06■□□□□ 0.16
USH1C-201ENST00000005226 PCCAP05165 728 aaPredicted RBP16.06■□□□□ 0.16
USH1C-201ENST00000005226 CC2D1AQ6P1N0 951 aaPredicted RBP16.06■□□□□ 0.16
USH1C-201ENST00000005226 TEX13AQ9BXU3 409 aaPredicted RBP16.06■□□□□ 0.16
USH1C-201ENST00000005226 PARD6BQ9BYG5 372 aa16.06■□□□□ 0.16
USH1C-201ENST00000005226 ASAP1Q9ULH1 1129 aa16.06■□□□□ 0.16
USH1C-201ENST00000005226 CCDC66A2RUB6 948 aa16.06■□□□□ 0.16
USH1C-201ENST00000005226 SMIM22K7EJ46 135 aa16.06■□□□□ 0.16
USH1C-201ENST00000005226 MBD4O95243 580 aa16.06■□□□□ 0.16
USH1C-201ENST00000005226 AFMP43652 599 aa16.06■□□□□ 0.16
USH1C-201ENST00000005226 DHX8Q14562 1220 aaKnown RBP16.06■□□□□ 0.16
USH1C-201ENST00000005226 SMYD4Q8IYR2 804 aaPredicted RBP16.06■□□□□ 0.16
USH1C-201ENST00000005226 NUP133Q8WUM0 1156 aa16.06■□□□□ 0.16
USH1C-201ENST00000005226 SMARCE1Q969G3 411 aa16.06■□□□□ 0.16
USH1C-201ENST00000005226 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.06■□□□□ 0.16
USH1C-201ENST00000005226 MYO5AQ9Y4I1 1855 aaKnown RBP16.05■□□□□ 0.16
USH1C-201ENST00000005226 ZNF18P17022 549 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 TRHP20396 242 aaPredicted RBP16.05■□□□□ 0.16
USH1C-201ENST00000005226 IFNL3Q8IZI9 196 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 MAGEB6Q8N7X4 407 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 ZBTB38Q8NAP3 1195 aaPredicted RBP16.05■□□□□ 0.16
USH1C-201ENST00000005226 CCDC12Q8WUD4 166 aaPredicted RBP16.05■□□□□ 0.16
USH1C-201ENST00000005226 KIFC2Q96AC6 838 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 TMEM87BQ96K49 555 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 OAS2P29728 719 aaKnown RBP16.05■□□□□ 0.16
USH1C-201ENST00000005226 TAF3Q5VWG9 929 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 STAMQ92783 540 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 MPHOSPH8Q99549 860 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 NAPBQ9H115 298 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 CSRNP2Q9H175 543 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 CABP5Q9NP86 173 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 PUF60Q9UHX1 559 aaKnown RBP16.05■□□□□ 0.16
USH1C-201ENST00000005226 MRFAP1Q9Y605 127 aa16.05■□□□□ 0.16
USH1C-201ENST00000005226 TCRBV5S4A2TA0A5A2 114 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 FMNL1O95466 1100 aaPredicted RBP16.04■□□□□ 0.16
USH1C-201ENST00000005226 MMP1P03956 469 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 SRRTQ9BXP5 876 aaKnown RBP16.04■□□□□ 0.16
USH1C-201ENST00000005226 STRN4Q9NRL3 753 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 KIF1AQ12756 1690 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 NUP188Q5SRE5 1749 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 ERVV-2B6SEH9 535 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 STX10O60499 249 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 PTPREP23469 700 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 MORC3Q14149 939 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 UBE3CQ15386 1083 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 KIF6Q6ZMV9 814 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 RAI14Q9P0K7 980 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 COL18A1P39060 1754 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 PCDH11XQ9BZA7 1347 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 PCDH11YQ9BZA8 1340 aa16.04■□□□□ 0.16
USH1C-201ENST00000005226 A0A087X0B3 334 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 ANKRD18BA2A2Z9 1011 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 RAD9BQ6WBX8 426 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 SGMS1Q86VZ5 419 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 FCHSD1Q86WN1 690 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 EPSTI1Q96J88 318 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 PRDM11Q9NQV5 511 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 TBC1D2BQ9UPU7 963 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 SPEF2Q9C093 1822 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 ABL1P00519 1130 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 CD44P16070 742 aaKnown RBP16.03■□□□□ 0.16
USH1C-201ENST00000005226 SARSP49591 514 aaKnown RBP16.03■□□□□ 0.16
USH1C-201ENST00000005226 IRX5P78411 483 aaPredicted RBP16.03■□□□□ 0.16
USH1C-201ENST00000005226 RBL2Q08999 1139 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 SMC1AQ14683 1233 aaKnown RBP16.03■□□□□ 0.16
USH1C-201ENST00000005226 NR1I3Q14994 352 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 SAFBQ15424 915 aaKnown RBP eCLIP16.03■□□□□ 0.16
USH1C-201ENST00000005226 PDE8BO95263 885 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 RSRC2Q7L4I2 434 aaKnown RBP16.03■□□□□ 0.16
USH1C-201ENST00000005226 VGLL2Q8N8G2 317 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 MIGA1Q8NAN2 632 aa16.03■□□□□ 0.16
USH1C-201ENST00000005226 ENOX1Q8TC92 643 aaKnown RBP16.03■□□□□ 0.16
USH1C-201ENST00000005226 PATL2C9JE40 543 aaKnown RBP16.02■□□□□ 0.16
USH1C-201ENST00000005226 IRS4O14654 1257 aaPredicted RBP16.02■□□□□ 0.16
USH1C-201ENST00000005226 ACTN4O43707 911 aaKnown RBP16.02■□□□□ 0.16
USH1C-201ENST00000005226 IFNAR1P17181 557 aa16.02■□□□□ 0.16
USH1C-201ENST00000005226 MAPK8IP2Q13387 824 aaPredicted RBP16.02■□□□□ 0.16
USH1C-201ENST00000005226 RTN1Q16799 776 aa16.02■□□□□ 0.16
USH1C-201ENST00000005226 EARS2Q5JPH6 523 aaKnown RBP16.02■□□□□ 0.16
USH1C-201ENST00000005226 NLRP10Q86W26 655 aa16.02■□□□□ 0.16
USH1C-201ENST00000005226 MLKLQ8NB16 471 aa16.02■□□□□ 0.16
USH1C-201ENST00000005226 SHISA4Q96DD7 197 aa16.02■□□□□ 0.16
USH1C-201ENST00000005226 ALS2Q96Q42 1657 aa16.02■□□□□ 0.16
USH1C-201ENST00000005226 KCPQ6ZWJ8 1503 aa16.02■□□□□ 0.15
USH1C-201ENST00000005226 WNT7AO00755 349 aa16.02■□□□□ 0.15
USH1C-201ENST00000005226 PRDM1O75626 825 aa16.02■□□□□ 0.15
USH1C-201ENST00000005226 TTF1Q15361 905 aaPredicted RBP16.02■□□□□ 0.15
USH1C-201ENST00000005226 NOM1Q5C9Z4 860 aaKnown RBP16.02■□□□□ 0.15
USH1C-201ENST00000005226 CREBRFQ8IUR6 639 aa16.02■□□□□ 0.15
USH1C-201ENST00000005226 GPR161Q8N6U8 529 aaKnown RBP16.02■□□□□ 0.15
USH1C-201ENST00000005226 TMEM51Q9NW97 253 aa16.02■□□□□ 0.15
USH1C-201ENST00000005226 TRMT112Q9UI30 125 aaKnown RBP16.02■□□□□ 0.15
USH1C-201ENST00000005226 FBXO3Q9UK99 471 aa16.02■□□□□ 0.15
USH1C-201ENST00000005226 AKAP11Q9UKA4 1901 aa16.02■□□□□ 0.15
USH1C-201ENST00000005226 LAMB4A4D0S4 1761 aa16.01■□□□□ 0.15
USH1C-201ENST00000005226 GSG1L2A8MUP6 293 aa16.01■□□□□ 0.15
USH1C-201ENST00000005226 CTSWP56202 376 aa16.01■□□□□ 0.15
USH1C-201ENST00000005226 MFSD6Q6ZSS7 791 aa16.01■□□□□ 0.15
USH1C-201ENST00000005226 LCORLQ8N3X6 602 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms