RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 KRTAP10-7P60409 375 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-222ENST00000642141 MIR22HGQ0VDD5 57 aa4.13□□□□□ -1.75
SCN1A-222ENST00000642141 SPRR2DP22532 72 aa4.1□□□□□ -1.75
SCN1A-222ENST00000642141 KRTAP5-3Q6L8H2 238 aa4.1□□□□□ -1.75
SCN1A-222ENST00000642141 A8MU10 97 aa4.08□□□□□ -1.76
SCN1A-222ENST00000642141 KRTAP10-12P60413 245 aa4.08□□□□□ -1.76
SCN1A-222ENST00000642141 KRTAP2-2Q9BYT5 123 aa4.06□□□□□ -1.76
SCN1A-222ENST00000642141 KRTAP2-1Q9BYU5 128 aa4.06□□□□□ -1.76
SCN1A-222ENST00000642141 KRTAP13-4Q3LI77 160 aa4.03□□□□□ -1.76
SCN1A-222ENST00000642141 A0A1B0GU33 70 aa4.02□□□□□ -1.77
SCN1A-222ENST00000642141 K7ERS5 55 aa4.01□□□□□ -1.77
SCN1A-222ENST00000642141 CAMK2N1Q7Z7J9 78 aa3.98□□□□□ -1.77
SCN1A-222ENST00000642141 A0A0D9SG42 100 aa3.94□□□□□ -1.78
SCN1A-222ENST00000642141 SPINT4Q6UDR6 99 aa3.87□□□□□ -1.79
SCN1A-222ENST00000642141 KRTAP19-7Q3SYF9 63 aa3.86□□□□□ -1.79
SCN1A-222ENST00000642141 MT1EP04732 61 aa3.83□□□□□ -1.8
SCN1A-222ENST00000642141 DSTQ03001 7570 aaKnown RBP3.82□□□□□ -1.8
SCN1A-222ENST00000642141 KRTAP12-1P59990 96 aa3.8□□□□□ -1.8
SCN1A-222ENST00000642141 ROMO1P60602 79 aa3.8□□□□□ -1.8
SCN1A-222ENST00000642141 KRTAP25-1Q3LHN0 102 aa3.8□□□□□ -1.8
SCN1A-222ENST00000642141 KRTAP19-3Q7Z4W3 81 aa3.8□□□□□ -1.8
SCN1A-222ENST00000642141 PRAC1Q96KF2 57 aa3.8□□□□□ -1.8
SCN1A-222ENST00000642141 KRTAP19-5Q3LI72 72 aa3.78□□□□□ -1.8
SCN1A-222ENST00000642141 GPR98Q8WXG9 6306 aa3.73□□□□□ -1.81
SCN1A-222ENST00000642141 MT1GP13640 62 aa3.69□□□□□ -1.82
SCN1A-222ENST00000642141 LCE3AQ5TA76 89 aa3.66□□□□□ -1.82
SCN1A-222ENST00000642141 MT1MQ8N339 61 aa3.66□□□□□ -1.82
SCN1A-222ENST00000642141 PP632Q6XCG6 107 aa3.65□□□□□ -1.83
SCN1A-222ENST00000642141 MT1LQ93083 61 aa3.65□□□□□ -1.83
SCN1A-222ENST00000642141 KRTAP4-3Q9BYR4 195 aa3.65□□□□□ -1.83
SCN1A-222ENST00000642141 C10orf95Q9H7T3 257 aa3.65□□□□□ -1.83
SCN1A-222ENST00000642141 MT4P47944 62 aa3.63□□□□□ -1.83
SCN1A-222ENST00000642141 TNP1P09430 55 aa3.62□□□□□ -1.83
SCN1A-222ENST00000642141 HMCN1Q96RW7 5635 aa3.58□□□□□ -1.84
SCN1A-222ENST00000642141 KRTAP15-1Q3LI76 137 aa3.54□□□□□ -1.84
SCN1A-222ENST00000642141 KRTAP23-1A1A580 65 aa3.5□□□□□ -1.85
SCN1A-222ENST00000642141 KRTAP12-3P60328 96 aa3.5□□□□□ -1.85
SCN1A-222ENST00000642141 AHNAK2Q8IVF2 5795 aa3.49□□□□□ -1.85
SCN1A-222ENST00000642141 KRTAP5-4Q6L8H1 288 aa3.48□□□□□ -1.85
SCN1A-222ENST00000642141 KRTAP5-10Q6L8G5 202 aa3.38□□□□□ -1.87
SCN1A-222ENST00000642141 KRTAP5-5Q701N2 237 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-222ENST00000642141 KRTAP20-2Q3LI61 65 aa3.32□□□□□ -1.88
SCN1A-222ENST00000642141 KRTAP12-4P60329 112 aa3.28□□□□□ -1.88
SCN1A-222ENST00000642141 LUZP6Q538Z0 58 aa3.27□□□□□ -1.89
SCN1A-222ENST00000642141 SPRR5A0A1B0GTR4 108 aa3.26□□□□□ -1.89
SCN1A-222ENST00000642141 NDUFAF8A1L188 74 aa3.25□□□□□ -1.89
SCN1A-222ENST00000642141 KRTAP5-7Q6L8G8 165 aa3.24□□□□□ -1.89
SCN1A-222ENST00000642141 LCE3CQ5T5A8 94 aa3.21□□□□□ -1.9
SCN1A-222ENST00000642141 SYNE1Q8NF91 8797 aaKnown RBP3.19□□□□□ -1.9
SCN1A-222ENST00000642141 KRTAP6-1Q3LI64 71 aa3.12□□□□□ -1.91
SCN1A-222ENST00000642141 A0A0A0MQY5 61 aa3.1□□□□□ -1.91
SCN1A-222ENST00000642141 MT1AP04731 61 aa3.09□□□□□ -1.91
SCN1A-222ENST00000642141 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-222ENST00000642141 KRTAP9-6A8MVA2 160 aa3.06□□□□□ -1.92
SCN1A-222ENST00000642141 KRTAP5-2Q701N4 177 aa3.04□□□□□ -1.92
SCN1A-222ENST00000642141 KRTAP6-2Q3LI66 62 aa3□□□□□ -1.93
SCN1A-222ENST00000642141 KRTAP5-11Q6L8G4 156 aa2.97□□□□□ -1.93
SCN1A-222ENST00000642141 KRTAP5-8O75690 187 aa2.95□□□□□ -1.94
SCN1A-222ENST00000642141 OBSCNQ5VST9 7968 aa2.91□□□□□ -1.94
SCN1A-222ENST00000642141 AHNAKQ09666 5890 aaKnown RBP2.88□□□□□ -1.95
SCN1A-222ENST00000642141 INE1O15225 51 aa2.88□□□□□ -1.95
SCN1A-222ENST00000642141 MUC5BQ9HC84 5762 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-222ENST00000642141 MUC5ACP98088 5654 aa2.85□□□□□ -1.95
SCN1A-222ENST00000642141 LCE1EQ5T753 118 aa2.84□□□□□ -1.95
SCN1A-222ENST00000642141 MT3P25713 68 aa2.83□□□□□ -1.96
SCN1A-222ENST00000642141 KRTAP5-1Q6L8H4 278 aa2.75□□□□□ -1.97
SCN1A-222ENST00000642141 LCE1BQ5T7P3 118 aa2.54□□□□□ -2
SCN1A-222ENST00000642141 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
SCN1A-222ENST00000642141 LCE1CQ5T751 118 aa2.4□□□□□ -2.03
SCN1A-222ENST00000642141 LCE1FQ5T754 118 aa2.36□□□□□ -2.03
SCN1A-222ENST00000642141 LCE3DQ9BYE3 92 aa2.3□□□□□ -2.04
SCN1A-222ENST00000642141 LCE3EQ5T5B0 92 aa2.16□□□□□ -2.06
SCN1A-222ENST00000642141 KRTAP21-2Q3LI59 83 aa2.04□□□□□ -2.08
SCN1A-222ENST00000642141 PHGR1C9JFL3 82 aa2□□□□□ -2.09
SCN1A-222ENST00000642141 PRM1P04553 51 aa1.93□□□□□ -2.1
SCN1A-222ENST00000642141 MUC19Q7Z5P9 8384 aa1.8□□□□□ -2.12
SCN1A-222ENST00000642141 KRTAP21-1Q3LI58 79 aa1.48□□□□□ -2.17
SCN1A-222ENST00000642141 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 75.6 ms