RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	KRTAP10-7	P60409	375 aa	Predicted RBP	4.15	□□□□□ -1.75
SCN1A-222	ENST00000642141	MIR22HG	Q0VDD5	57 aa		4.13	□□□□□ -1.75
SCN1A-222	ENST00000642141	SPRR2D	P22532	72 aa		4.1	□□□□□ -1.75
SCN1A-222	ENST00000642141	KRTAP5-3	Q6L8H2	238 aa		4.1	□□□□□ -1.75
SCN1A-222	ENST00000642141		A8MU10	97 aa		4.08	□□□□□ -1.76
SCN1A-222	ENST00000642141	KRTAP10-12	P60413	245 aa		4.08	□□□□□ -1.76
SCN1A-222	ENST00000642141	KRTAP2-2	Q9BYT5	123 aa		4.06	□□□□□ -1.76
SCN1A-222	ENST00000642141	KRTAP2-1	Q9BYU5	128 aa		4.06	□□□□□ -1.76
SCN1A-222	ENST00000642141	KRTAP13-4	Q3LI77	160 aa		4.03	□□□□□ -1.76
SCN1A-222	ENST00000642141		A0A1B0GU33	70 aa		4.02	□□□□□ -1.77
SCN1A-222	ENST00000642141		K7ERS5	55 aa		4.01	□□□□□ -1.77
SCN1A-222	ENST00000642141	CAMK2N1	Q7Z7J9	78 aa		3.98	□□□□□ -1.77
SCN1A-222	ENST00000642141		A0A0D9SG42	100 aa		3.94	□□□□□ -1.78
SCN1A-222	ENST00000642141	SPINT4	Q6UDR6	99 aa		3.87	□□□□□ -1.79
SCN1A-222	ENST00000642141	KRTAP19-7	Q3SYF9	63 aa		3.86	□□□□□ -1.79
SCN1A-222	ENST00000642141	MT1E	P04732	61 aa		3.83	□□□□□ -1.8
SCN1A-222	ENST00000642141	DST	Q03001	7570 aa	Known RBP	3.82	□□□□□ -1.8
SCN1A-222	ENST00000642141	KRTAP12-1	P59990	96 aa		3.8	□□□□□ -1.8
SCN1A-222	ENST00000642141	ROMO1	P60602	79 aa		3.8	□□□□□ -1.8
SCN1A-222	ENST00000642141	KRTAP25-1	Q3LHN0	102 aa		3.8	□□□□□ -1.8
SCN1A-222	ENST00000642141	KRTAP19-3	Q7Z4W3	81 aa		3.8	□□□□□ -1.8
SCN1A-222	ENST00000642141	PRAC1	Q96KF2	57 aa		3.8	□□□□□ -1.8
SCN1A-222	ENST00000642141	KRTAP19-5	Q3LI72	72 aa		3.78	□□□□□ -1.8
SCN1A-222	ENST00000642141	GPR98	Q8WXG9	6306 aa		3.73	□□□□□ -1.81
SCN1A-222	ENST00000642141	MT1G	P13640	62 aa		3.69	□□□□□ -1.82
SCN1A-222	ENST00000642141	LCE3A	Q5TA76	89 aa		3.66	□□□□□ -1.82
SCN1A-222	ENST00000642141	MT1M	Q8N339	61 aa		3.66	□□□□□ -1.82
SCN1A-222	ENST00000642141	PP632	Q6XCG6	107 aa		3.65	□□□□□ -1.83
SCN1A-222	ENST00000642141	MT1L	Q93083	61 aa		3.65	□□□□□ -1.83
SCN1A-222	ENST00000642141	KRTAP4-3	Q9BYR4	195 aa		3.65	□□□□□ -1.83
SCN1A-222	ENST00000642141	C10orf95	Q9H7T3	257 aa		3.65	□□□□□ -1.83
SCN1A-222	ENST00000642141	MT4	P47944	62 aa		3.63	□□□□□ -1.83
SCN1A-222	ENST00000642141	TNP1	P09430	55 aa		3.62	□□□□□ -1.83
SCN1A-222	ENST00000642141	HMCN1	Q96RW7	5635 aa		3.58	□□□□□ -1.84
SCN1A-222	ENST00000642141	KRTAP15-1	Q3LI76	137 aa		3.54	□□□□□ -1.84
SCN1A-222	ENST00000642141	KRTAP23-1	A1A580	65 aa		3.5	□□□□□ -1.85
SCN1A-222	ENST00000642141	KRTAP12-3	P60328	96 aa		3.5	□□□□□ -1.85
SCN1A-222	ENST00000642141	AHNAK2	Q8IVF2	5795 aa		3.49	□□□□□ -1.85
SCN1A-222	ENST00000642141	KRTAP5-4	Q6L8H1	288 aa		3.48	□□□□□ -1.85
SCN1A-222	ENST00000642141	KRTAP5-10	Q6L8G5	202 aa		3.38	□□□□□ -1.87
SCN1A-222	ENST00000642141	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.33	□□□□□ -1.88
SCN1A-222	ENST00000642141	KRTAP20-2	Q3LI61	65 aa		3.32	□□□□□ -1.88
SCN1A-222	ENST00000642141	KRTAP12-4	P60329	112 aa		3.28	□□□□□ -1.88
SCN1A-222	ENST00000642141	LUZP6	Q538Z0	58 aa		3.27	□□□□□ -1.89
SCN1A-222	ENST00000642141	SPRR5	A0A1B0GTR4	108 aa		3.26	□□□□□ -1.89
SCN1A-222	ENST00000642141	NDUFAF8	A1L188	74 aa		3.25	□□□□□ -1.89
SCN1A-222	ENST00000642141	KRTAP5-7	Q6L8G8	165 aa		3.24	□□□□□ -1.89
SCN1A-222	ENST00000642141	LCE3C	Q5T5A8	94 aa		3.21	□□□□□ -1.9
SCN1A-222	ENST00000642141	SYNE1	Q8NF91	8797 aa	Known RBP	3.19	□□□□□ -1.9
SCN1A-222	ENST00000642141	KRTAP6-1	Q3LI64	71 aa		3.12	□□□□□ -1.91
SCN1A-222	ENST00000642141		A0A0A0MQY5	61 aa		3.1	□□□□□ -1.91
SCN1A-222	ENST00000642141	MT1A	P04731	61 aa		3.09	□□□□□ -1.91
SCN1A-222	ENST00000642141	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.08	□□□□□ -1.92
SCN1A-222	ENST00000642141	KRTAP9-6	A8MVA2	160 aa		3.06	□□□□□ -1.92
SCN1A-222	ENST00000642141	KRTAP5-2	Q701N4	177 aa		3.04	□□□□□ -1.92
SCN1A-222	ENST00000642141	KRTAP6-2	Q3LI66	62 aa		3	□□□□□ -1.93
SCN1A-222	ENST00000642141	KRTAP5-11	Q6L8G4	156 aa		2.97	□□□□□ -1.93
SCN1A-222	ENST00000642141	KRTAP5-8	O75690	187 aa		2.95	□□□□□ -1.94
SCN1A-222	ENST00000642141	OBSCN	Q5VST9	7968 aa		2.91	□□□□□ -1.94
SCN1A-222	ENST00000642141	AHNAK	Q09666	5890 aa	Known RBP	2.88	□□□□□ -1.95
SCN1A-222	ENST00000642141	INE1	O15225	51 aa		2.88	□□□□□ -1.95
SCN1A-222	ENST00000642141	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.86	□□□□□ -1.95
SCN1A-222	ENST00000642141	MUC5AC	P98088	5654 aa		2.85	□□□□□ -1.95
SCN1A-222	ENST00000642141	LCE1E	Q5T753	118 aa		2.84	□□□□□ -1.95
SCN1A-222	ENST00000642141	MT3	P25713	68 aa		2.83	□□□□□ -1.96
SCN1A-222	ENST00000642141	KRTAP5-1	Q6L8H4	278 aa		2.75	□□□□□ -1.97
SCN1A-222	ENST00000642141	LCE1B	Q5T7P3	118 aa		2.54	□□□□□ -2
SCN1A-222	ENST00000642141	KRTAP4-4	Q9BYR3	166 aa		2.54	□□□□□ -2
SCN1A-222	ENST00000642141	LCE1C	Q5T751	118 aa		2.4	□□□□□ -2.03
SCN1A-222	ENST00000642141	LCE1F	Q5T754	118 aa		2.36	□□□□□ -2.03
SCN1A-222	ENST00000642141	LCE3D	Q9BYE3	92 aa		2.3	□□□□□ -2.04
SCN1A-222	ENST00000642141	LCE3E	Q5T5B0	92 aa		2.16	□□□□□ -2.06
SCN1A-222	ENST00000642141	KRTAP21-2	Q3LI59	83 aa		2.04	□□□□□ -2.08
SCN1A-222	ENST00000642141	PHGR1	C9JFL3	82 aa		2	□□□□□ -2.09
SCN1A-222	ENST00000642141	PRM1	P04553	51 aa		1.93	□□□□□ -2.1
SCN1A-222	ENST00000642141	MUC19	Q7Z5P9	8384 aa		1.8	□□□□□ -2.12
SCN1A-222	ENST00000642141	KRTAP21-1	Q3LI58	79 aa		1.48	□□□□□ -2.17
SCN1A-222	ENST00000642141	MUC16	Q8WXI7	14507 aa		1.25	□□□□□ -2.21

Retrieved 78 of 20,778 RNA–protein pairs in 332.6 ms