RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 LINC00643Q86TS7 51 aa-2.02□□□□□ -2.73
SCN1A-208ENST00000625916 ABCA6Q8N139 1617 aa-2.02□□□□□ -2.73
SCN1A-208ENST00000625916 IQGAP1P46940 1657 aa-2.02□□□□□ -2.73
SCN1A-208ENST00000625916 NDUFA1O15239 70 aa-2.03□□□□□ -2.73
SCN1A-208ENST00000625916 CEP162Q5TB80 1403 aa-2.03□□□□□ -2.73
SCN1A-208ENST00000625916 SMIM27A0A1W2PRY6 76 aa-2.04□□□□□ -2.74
SCN1A-208ENST00000625916 KCNQ1DNQ9H478 68 aa-2.04□□□□□ -2.74
SCN1A-208ENST00000625916 MYO5CQ9NQX4 1742 aa-2.04□□□□□ -2.74
SCN1A-208ENST00000625916 DUOX1Q9NRD9 1551 aa-2.04□□□□□ -2.74
SCN1A-208ENST00000625916 TCEAL7Q9BRU2 100 aa-2.05□□□□□ -2.74
SCN1A-208ENST00000625916 TOMM7Q9P0U1 55 aa-2.05□□□□□ -2.74
SCN1A-208ENST00000625916 PKIAP61925 76 aa-2.06□□□□□ -2.74
SCN1A-208ENST00000625916 ABCC8Q09428 1581 aa-2.06□□□□□ -2.74
SCN1A-208ENST00000625916 M0R143 59 aa-2.07□□□□□ -2.74
SCN1A-208ENST00000625916 SYCP2Q9BX26 1530 aa-2.07□□□□□ -2.74
SCN1A-208ENST00000625916 H3BUT2 72 aa-2.08□□□□□ -2.74
SCN1A-208ENST00000625916 PYY3Q5JQD4 70 aa-2.08□□□□□ -2.74
SCN1A-208ENST00000625916 UBL5Q9BZL1 73 aa-2.08□□□□□ -2.74
SCN1A-208ENST00000625916 PPLO60437 1756 aa-2.08□□□□□ -2.74
SCN1A-208ENST00000625916 S100A16Q96FQ6 103 aaKnown RBP-2.09□□□□□ -2.74
SCN1A-208ENST00000625916 CPS1P31327 1500 aa-2.09□□□□□ -2.74
SCN1A-208ENST00000625916 MROH1Q8NDA8 1641 aa-2.09□□□□□ -2.74
SCN1A-208ENST00000625916 ADCY10Q96PN6 1610 aa-2.09□□□□□ -2.74
SCN1A-208ENST00000625916 SNHG12Q9BXW3 62 aa-2.1□□□□□ -2.75
SCN1A-208ENST00000625916 NMES1Q9C002 83 aa-2.1□□□□□ -2.75
SCN1A-208ENST00000625916 PRXQ9BXM0 1461 aa-2.1□□□□□ -2.75
SCN1A-208ENST00000625916 A0A087WXM4 84 aa-2.11□□□□□ -2.75
SCN1A-208ENST00000625916 PVALEFA0A1B0GWK0 134 aa-2.11□□□□□ -2.75
SCN1A-208ENST00000625916 AKAP12Q02952 1782 aa-2.12□□□□□ -2.75
SCN1A-208ENST00000625916 UGGT2Q9NYU1 1516 aa-2.12□□□□□ -2.75
SCN1A-208ENST00000625916 ATP5EP2Q5VTU8 51 aa-2.13□□□□□ -2.75
SCN1A-208ENST00000625916 TMEM167AQ8TBQ9 72 aa-2.13□□□□□ -2.75
SCN1A-208ENST00000625916 HILPDAQ9Y5L2 63 aa-2.13□□□□□ -2.75
SCN1A-208ENST00000625916 IQGAP2Q13576 1575 aa-2.14□□□□□ -2.75
SCN1A-208ENST00000625916 MROH2BQ7Z745 1585 aa-2.14□□□□□ -2.75
SCN1A-208ENST00000625916 PDCD5O14737 125 aa-2.14□□□□□ -2.75
SCN1A-208ENST00000625916 SMIM13P0DJ93 91 aa-2.14□□□□□ -2.75
SCN1A-208ENST00000625916 PRCDQ00LT1 54 aa-2.15□□□□□ -2.75
SCN1A-208ENST00000625916 KANTRA0A1W2PQU2 76 aa-2.16□□□□□ -2.76
SCN1A-208ENST00000625916 CLTCL1P53675 1640 aa-2.17□□□□□ -2.76
SCN1A-208ENST00000625916 M0R1W7 72 aa-2.17□□□□□ -2.76
SCN1A-208ENST00000625916 Q9H521 79 aa-2.2□□□□□ -2.76
SCN1A-208ENST00000625916 TTC37Q6PGP7 1564 aa-2.2□□□□□ -2.76
SCN1A-208ENST00000625916 LINC00308Q8TCZ7 52 aa-2.22□□□□□ -2.76
SCN1A-208ENST00000625916 IQGAP3Q86VI3 1631 aa-2.22□□□□□ -2.76
SCN1A-208ENST00000625916 TMEM167BQ9NRX6 74 aa-2.23□□□□□ -2.77
SCN1A-208ENST00000625916 EFCAB5A4FU69 1503 aa-2.23□□□□□ -2.77
SCN1A-208ENST00000625916 SAMD9LQ8IVG5 1584 aa-2.23□□□□□ -2.77
SCN1A-208ENST00000625916 V9GYS6 101 aa-2.26□□□□□ -2.77
SCN1A-208ENST00000625916 K7EIM0 57 aa-2.28□□□□□ -2.77
SCN1A-208ENST00000625916 ST20Q9HBF5 79 aa-2.3□□□□□ -2.78
SCN1A-208ENST00000625916 H3BVH4 76 aa-2.31□□□□□ -2.78
SCN1A-208ENST00000625916 ADIRFQ15847 76 aa-2.31□□□□□ -2.78
SCN1A-208ENST00000625916 S100ZQ8WXG8 99 aa-2.31□□□□□ -2.78
SCN1A-208ENST00000625916 SMIM5Q71RC9 77 aa-2.32□□□□□ -2.78
SCN1A-208ENST00000625916 RPL39P62891 51 aaKnown RBP-2.35□□□□□ -2.79
SCN1A-208ENST00000625916 ARHGAP5-AS1Q96IT6 56 aa-2.35□□□□□ -2.79
SCN1A-208ENST00000625916 K7EMI3 77 aa-2.36□□□□□ -2.79
SCN1A-208ENST00000625916 RPL39LQ96EH5 51 aaKnown RBP-2.37□□□□□ -2.79
SCN1A-208ENST00000625916 H0YGX0 51 aa-2.39□□□□□ -2.79
SCN1A-208ENST00000625916 S100A13Q99584 98 aa-2.39□□□□□ -2.79
SCN1A-208ENST00000625916 SNRPGP15A8MWD9 76 aa-2.41□□□□□ -2.8
SCN1A-208ENST00000625916 RPL39P5Q59GN2 51 aa-2.41□□□□□ -2.8
SCN1A-208ENST00000625916 C18orf32Q8TCD1 76 aa-2.41□□□□□ -2.8
SCN1A-208ENST00000625916 IGIPA6NJ69 53 aa-2.42□□□□□ -2.8
SCN1A-208ENST00000625916 ATXN8Q156A1 80 aa-2.42□□□□□ -2.8
SCN1A-208ENST00000625916 SERF2P84101 59 aa-2.44□□□□□ -2.8
SCN1A-208ENST00000625916 FANCD2Q9BXW9 1451 aa-2.45□□□□□ -2.8
SCN1A-208ENST00000625916 PLNP26678 52 aa-2.46□□□□□ -2.8
SCN1A-208ENST00000625916 GCC2Q8IWJ2 1684 aa-2.47□□□□□ -2.81
SCN1A-208ENST00000625916 SNRPGP62308 76 aaKnown RBP-2.49□□□□□ -2.81
SCN1A-208ENST00000625916 GNG13Q9P2W3 67 aa-2.51□□□□□ -2.81
SCN1A-208ENST00000625916 LINC01549A6NIU2 74 aa-2.53□□□□□ -2.81
SCN1A-208ENST00000625916 GNG2P59768 71 aa-2.62□□□□□ -2.83
SCN1A-208ENST00000625916 SMCO4Q9NRQ5 59 aa-2.64□□□□□ -2.83
SCN1A-208ENST00000625916 CMC2Q9NRP2 79 aa-2.69□□□□□ -2.84
SCN1A-208ENST00000625916 SMIM31A0A1B0GVY4 71 aa-2.96□□□□□ -2.88
SCN1A-208ENST00000625916 TOMM5Q8N4H5 51 aa-3.05□□□□□ -2.9
Retrieved 78 of 20,778 RNA–protein pairs in 38.7 ms